1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cgaacgtggcgtctaatttgcttcctctttggatttttgagcacaagcttccaaaatatttggatacttataattgtgttaccttttgtgaattttgtagGGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGGCATGTCATCTTCTTGAGCTTTGATGAAAACAAG
species | Physcomitrella patens |
transcript | PP1S58_148V6.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAG GGTATGCCTGGCATGGCTGGAGGANGTGGTGCCGGEST: gi|67718144|gb|BJ968403.1|BJ968403
genomic: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAGgtttgtgctt ... aattttgtagGGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGG
EST: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAG GGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCNGGANCTTTGGACTTCTTEST: gi|67718192|gb|BJ968451.1|BJ968451
genomic: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAGgtttgtgctt ... aattttgtagGGTATGCCTGGCATGGCTGGAGGAGGTGGTGCC-GGAGCTTTGGACTTCTT
EST: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAG GGTATGCCTGGCATGGCTGGAGGANGTGGTGCCGGAGCTTTGGACTTCTTAEST: gi|162158680|gb|FC335047.1|FC335047
genomic: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAGgtttgtgctt ... aattttgtagGGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTA
EST: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAG GGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAEST: gi|162261438|gb|FC438274.1|FC438274
genomic: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAGgtttgtgctt ... aattttgtagGGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTA
EST: CAGCTCCTGCGGGGGGACCCAATGCGGCTCCCCTTGACCTCTTTCCTCAA GNTATGCCTGACATGGCTGGAEST: gi|162150756|gb|FC327028.1|FC327028
genomic: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAGgtttgtgctt ... aattttgtagGGTATGCCTGGCATGGCTGGA
EST: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAG GGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTC
genomic: CAGCTCCTGCGGGGGGACCAAATGCGGCTCCCCTTGACCTCTTTCCTCAGgtttgtgctt ... aattttgtagGGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTC
agcttccaaaatatttggatacttataattgtgttaccttttgtgaattttgtagGGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGGCATGTCATCTTCTTGAGCTTTGATGAAAACAAG
aaaatatttggatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaacgtggcgtctaatttgcttcctctttggatttttgagcacaagcttccaaaatatttggatacttataattgtgttaccttttgtgaattttgtagGGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGGCATGTCATCTTCTTGAGCTTTGATGAAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - -cacaagc