1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgaacggcgcgatgagtgagtggttgtgggtggttgggtggagtggcgaagcagaggttggtgtatgagtgatggatggatgtggtgtggggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTGCGGCGACACGGAACAGTGAAGCACGCAGGGTTTGGGCTTGGATTCGAG
species | Physcomitrella patens |
transcript | PP1S56_236V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|37827302|gb|BJ585314.1|BJ585314
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|18337076|gb|BJ169100.1|BJ169100
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|162152027|gb|FC327928.1|FC327928
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGCCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|67695278|gb|BJ955511.1|BJ955511
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|37844733|gb|BJ602741.1|BJ602741
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|37836688|gb|BJ594696.1|BJ594696
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|37822216|gb|BJ580282.1|BJ580282
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGGGCGTCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|162223481|gb|FC399111.1|FC399111
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGCCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|18337957|gb|BJ169981.1|BJ169981
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTEST: gi|22132873|gb|BQ827413.1|BQ827413
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
EST: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAG GTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
genomic: CTGGTGGGTGGGAGTCAGAGGGAGGAGCGTCAGGACGTTCTTGAGAGGAGgtaagagatg ... ggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaacggcgcgatgagtgagtggttgtgggtggttgggtggagtggcgaagcagaggttggtgtatgagtgatggatggatgtggtgtggggatgcgcagGTTGAAGGAGATGAACTTGCCGATGGAGCCGTATGAGTGGTACATAGATTTGCGGCGACACGGAACAGTGAAGCACGCAGGGTTTGGGCTTGGATTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC