Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctacaatctccaaatctctcttatattattctgttaatcaatcgcaaggattaacctctttggttcacattttctttggtttttggaattaaattgaatcgggtactttcatgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACCAAGGCTCCCTTGGTACCCCCAGGTACCCCAGTGGTTAACGCGTTGGCTA

Basic information

species Physcomitrella patens
transcript PP1S55_204V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G010768_T01 (Zea mays), 3'ss of exon 2
gtaatctacaatctccaaatctctcttatattattctgttaatcaatcgcaaggattaacctctttggttcacattttctttggtttttggaattaaattgaatcgggtactttcatgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACCAAGGCTCCCTTGGTACCCCCAGGTACCCCAGTGGTTAACGCGTTGGCTA
                                    |   |  | | |    | || | ||        | |  |  |     | ||  | |     ||  |||  |   || ||||  ||||||| |||||||| || ||||||||||| |||    |||| ||||||||||||||||| ||  ||                                     
-----------------------------------gtaagagcccaccaagtgaataacccaaagcatgttaggtgattcaacgcttcagcaccatcatctaat--gtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG-------------------------------------

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 6
gtaatctacaatctccaaatctctcttatattattctgttaatcaatcgcaaggattaacctctttggttcacattttctttggtttttggaattaaattgaatcgggtactttcatgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACCAAGGCTCCCTTGGTACCCCCAGGTACCCCAGTGGTTAACGCGTTGGCTA
                                    |   |  | | |    | || |  |          |  |  |     | ||  | |     ||  |||  |   || ||||  ||||||| |||||||| || ||||||||||| |||    |||| ||||||||||||||||| ||  ||                                     
-----------------------------------gtaagagcccaccaagtgaataactcgaagcatgctaggtgattcagcgcttcagcaccatcatctaat--gtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG-------------------------------------

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
gtaatctacaatctccaaatctctcttatattattctgttaatcaatcgcaaggattaacctctttggttcacattttctttggtttttggaattaaattgaatcgggtactttcatgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACCAAGGCTCCCTTGGTACCCCCAGGTACCCCAGTGGTTAACGCGTTGGCTA
                            ||  |  |    ||| ||||  ||| ||    ||   || ||||      ||| ||   |  | |  |   |  | ||  | || ||||  ||||||| |||||||| || ||||||||||| |||    |||| ||||||||||||||||| ||  ||                                     
---------------------------gtaagagcccacgaat-aatccgaagcatg---ctgggtgattcag---cgcttcggcaatcagcaccatcatctaacgtct-ctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG-------------------------------------

upper sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 8
gtaatctacaatctccaaatctctcttatattattctgttaatcaatcgcaag-gattaacctctttggt--tcacattttctttggtttttggaattaaattgaatcgggtactttcatgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACCAAGGCTCCCTTGGTACCCCCAGGTACCCCAGTGGTTAACGCGTTGGCTA
                                     || |      | |||| |||||||||    |       ||   |   || | |      || |||    || |||   |   |  ||||||| || ||||| || ||||||||||| |||    |||||||||||||||||||||| ||| ||                                     
-------------------------------------gtaagagccccccaagtgattaacctgaaagcacgctgcacgctaggtgatatagcacttttaataccttctggtgtctctcttatgcagGACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162151054|gb|FC326871.1|FC326871
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|6167250|gb|AW145514.1|AW145514
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|40781590|gb|AJ583520.1|AJ583520
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162197483|gb|FC372861.1|FC372861
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162272926|gb|FC448043.1|FC448043
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162193993|gb|FC371806.1|FC371806
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|19778873|gb|BQ039371.1|BQ039371
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162197697|gb|FC374947.1|FC374947
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37846747|gb|BJ604755.1|BJ604755
EST:     GCACAAGAATCCAATTCAAGGAAGNCGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: GCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162170409|gb|FC347607.1|FC347607
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|67694287|gb|BJ954520.1|BJ954520
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162194434|gb|FC368539.1|FC368539
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37846190|gb|BJ604198.1|BJ604198
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37839344|gb|BJ597352.1|BJ597352
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162165316|gb|FC340817.1|FC340817
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162172409|gb|FC349078.1|FC349078
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37843618|gb|BJ601626.1|BJ601626
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|15262030|gb|BI437340.1|BI437340
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37845840|gb|BJ603848.1|BJ603848
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162182475|gb|FC357450.1|FC357450
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|18340626|gb|BJ172654.1|BJ172654
EST:     GAATCCAATTCAAGNAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCNTGAGCTACCTCACC
genomic: GAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37852058|gb|BJ610066.1|BJ610066
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37851817|gb|BJ609825.1|BJ609825
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162256552|gb|FC432862.1|FC432862
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162213492|gb|FC389364.1|FC389364
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37845009|gb|BJ603017.1|BJ603017
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGGAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|208346201|gb|DC925499.1|DC925499
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCANTTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37846798|gb|BJ604806.1|BJ604806
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGGAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|22133276|gb|BQ827647.1|BQ827647
EST:     ACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: ACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37837950|gb|BJ595958.1|BJ595958
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|19790272|gb|BQ041785.1|BQ041785
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37829754|gb|BJ587766.1|BJ587766
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162182387|gb|FC357986.1|FC357986
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162198718|gb|FC373486.1|FC373486
EST:     CCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162158409|gb|FC334204.1|FC334204
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37829752|gb|BJ587764.1|BJ587764
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|37845613|gb|BJ603621.1|BJ603621
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACC
EST: gi|162246259|gb|FC421966.1|FC421966
EST:     TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAG                         GAGAAAGT-CCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCAC
genomic: TCTTGCTGGCTGAGCTCTGCACAAGAATCCAATTCAAGGAAGACGGACAGgtaatctaca ... catgttgcagGAGAA-GTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacattttctttggtttttggaattaaattgaatcgggtactttcatgttgcagGAGAAGTTCCATTCTTTCCACCCGGTTGCCGTACTCCTGAGCTACCTCACCAAGGCTCCCTTGGTACCCCCAGGTACCCCAGTGGTTAACGCGTTGGCTA
                                       tactttc  CT-rich tract
               tttttggaattaaatt  TA-rich tract