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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgttgtatttatgtcactatcagaaatttgtaactgatcgttaagtatctcaagtgctacattgttctttggtcgtcaattttgtaatgtgatatgcagAATGCGTACCGGCAGCAAAGATTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTG

Basic information

species Physcomitrella patens
transcript PP1S55_201V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S55_201V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os07g29450.1 (Oryza sativa), 3'ss of exon 8
---------------------------------tcgttgtatttatgtcactat-cagaaatttgtaactgatcgttaagtatctcaagtgctacattgttctttggtc---gtcaa----ttttgtaatgtgat--atgcagAATGCGTACCGGCAGCAAAGATTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTG
                                 |  |  | |  | | || | | |   | |||| |||   | |||     | ||| | || |  ||  ||| |  ||      ||    ||||  ||| | ||  |||||||||||||  || || ||||||||| | | |||||| ||||||||||||||| | ||||| || || ||
gtaattttctacctcctctttctgttatcaatgttttcatttcaaagacattttacttcactttgcaacatttagtttttgttatcatgagcaatctttgtctatattctgtactaaggtttttttcaatataatctatgcagAATGCGTTACGTCAACAAAGATTTGTTCGGGAAGTCACAATACAGTACAATCTCTGCAACGAGCCATG

upper sequence: PP1S55_201V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 3'ss of exon 7
tcgttgtatttatgtcactatcagaaatt-tgtaactgatcgttaagtatctcaagtgctacattgttctttggtcgtcaatttt----gtaatgtgatatgcagAATGCGTACCGGCAGCAAAGATTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTG
     ||| | |  |   | | |  |||  ||| | |  |  || |     | |  || ||   |      |  || ||   |||    ||  | || | | ||||||||||  ||||| ||||||||| | |  ||||| |||||||||||||| ||||| |||||||| ||
-----gtaatcacatggattttattaatcatgttagtattgttttatctatttatttgttattataaatgataatcatcttctttgatggtgttttgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACTTATGTAATGAACCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatctcaagtgctacattgttctttggtcgtcaattttgtaatgtgatatgcagAATGCGTACCGGCAGCAAAGATTTATGCAGGAAGTGACAATACAGTACAATTTATGCAATGAACCGTG
                                 aattttgtaat  TA-rich tract