1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagttactttgtggcatttgaatctttcctgtcggggtcttaaaaacgttactgatagtataatttgatcatttttctttgtgatcagtagattaactaagtgtttggatgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTGAAACTGTACTGAGTTTCTTTGATCAAGTAGGCTTAGATGTAGCATTGTT
species | Physcomitrella patens |
transcript | PP1S54_186V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACCTGAGTTTCTGTTGTEST: gi|208372592|gb|DC944599.1|DC944599
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAAC-TGAGTTTCTGTTGT
EST: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTGEST: gi|162230432|gb|FC407087.1|FC407087
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
EST: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTGEST: gi|162158108|gb|FC333903.1|FC333903
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
EST: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTGEST: gi|162272364|gb|FC449029.1|FC449029
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
EST: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
ttgatcatttttctttgtgatcagtagattaactaagtgtttggatgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTGAAACTGTACTGAGTTTCTTTGATCAAGTAGGCTTAGATGTAGCATTGTT
gattaac putative branch site (score: 2)
atttttcttt TA-rich tract