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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgctttattgtctagtctttagtcaagtctttattgcagttctttgtggtacttttgagggccagtgaagtatctgatgccaggtttttgagagtgccccaaatgttaaaatctgtcacggttgtgcttattgcagTTGCATCAGATGATGCCATCTGTGATAACTTGCTTGGTTGCAAAGCGCCTGGGTGGCAAGGGCATTGTAAATCATTGGGAACTCAGAGATTTTACAGCTA

Basic information

species Physcomitrella patens
transcript PP1S54_134V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S54_134V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ13670 (Selaginella moellendorffii), 3'ss of exon 7
gtaagtttgctttattgtctagtctttagtcaagtctttattgcagttctttgtggtacttttgagggccagtgaagtatctgatgccaggtttttgagagtgccccaaatgttaaaatctgtcacggttgtgcttattgcagTTGCATCAGATGATGCCATCTGTGATAACTTGCTTGGTTGCAAAGCGCCTGGGTGGCAAGGGCATTGTAAATCATTGGGAACTCAGAGATTTTACAGCTA
                                                                       || ||| |  || |        | |||   ||   | | || |||     |||  || |      || |||| | |||||| |||||||||||||| | || ||| | |||||||||||||||||||| |||    | || || |||||||| ||| | || || ||||| |
-----------------------------------------------------------------------gt-aagcacttgttttg----ctctgatgatggtgcgagtgataa-----gtctaggcttgctgaatggcagCTCCATCAGTTGATGCCATCTGTGGTGACGTGCCTCGTTGCAAAGCGCCTGGGTGGTAAGAATTTCGTCAACCATTGGGAGCTCCGGGACTTCACAGCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtttttgagagtgccccaaatgttaaaatctgtcacggttgtgcttattgcagTTGCATCAGATGATGCCATCTGTGATAACTTGCTTGGTTGCAAAGCGCCTGGGTGGCAAGGGCATTGTAAATCATTGGGAACTCAGAGATTTTACAGCTA
                   aaatgttaaaatct  TA-rich tract