1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttaaggatttttaattcattactatccaaaaactcagtgtgtcattttcctgaacaaccgctgcccattattaatttggcgcattgtgtgaattttctagCAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACTCCGGATGATCCTAAGGGGAAGGTAGGTGTCACAGGTAGCGGAAAAGGAA
species | Physcomitrella patens |
transcript | PP1S51_234V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCAAAATGCTTGGCAGCAGTTTCAAACTACAAAAGGGAAAACGAAAAAA CAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACTEST: gi|208362835|gb|DC950635.1|DC950635
genomic: ATCAAAATGCTTGGCAGCAGTTTCAAACTACAAAAGGGAAAACGAAAAAAgtgagtgata ... aattttctagCAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACT
EST: ATCAAAATGCTTGGCAGCAGTTTCAAACTACAAAAGGGAAAACGAAAAAA CAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACTEST: gi|162217337|gb|FC392805.1|FC392805
genomic: ATCAAAATGCTTGGCAGCAGTTTCAAACTACAAAAGGGAAAACGAAAAAAgtgagtgata ... aattttctagCAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACT
EST: ATCAAAATGCTTGGCAGCAGTTTCAAACTACAAAAGGGAAAACGAAAAAA CAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACTEST: gi|37839714|gb|BJ597722.1|BJ597722
genomic: ATCAAAATGCTTGGCAGCAGTTTCAAACTACAAAAGGGAAAACGAAAAAAgtgagtgata ... aattttctagCAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACT
EST: ATCAAAATGCTTGGCAGCAGTTTCAAACTACAAAAGGGAAAACGAAAAAA CAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACT
genomic: ATCAAAATGCTTGGCAGCAGTTTCAAACTACAAAAGGGAAAACGAAAAAAgtgagtgata ... aattttctagCAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACT
tttcctgaacaaccgctgcccattattaatttggcgcattgtgtgaattttctagCAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACTCCGGATGATCCTAAGGGGAAGGTAGGTGTCACAGGTAGCGGAAAAGGAA
tattaat putative branch site (score: 2)
ttttct putative PPT
attattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaggatttttaattcattactatccaaaaactcagtgtgtcattttcctgaacaaccgctgcccattattaatttggcgcattgtgtgaattttctagCAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACTCCGGATGATCCTAAGGGGAAGGTAGGTGTCACAGGTAGCGGAAAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgccca