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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctctgcttcctgatatagctggatcacatgtattagattgctctaaaaactgaatgtgtacaattaaatgttgattgtaagttcatttcatgatgtagaaatcccgttcattttgacgcttatctacatctataaagttgtacaatctccgcagGTGGAATGGGATGAAATTAATGCAGCCTGGGGTCAGGCTTGCTTGCTTTTGCATACGATGGCACAATACTGTCGTCTAATTTTCAC

Basic information

species Physcomitrella patens
transcript PP1S51_193V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S51_193V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ28277 (Selaginella moellendorffii), 3'ss of exon 7
gtaagttctctgcttcctgatatagctggatcacatgtattagattgctctaaaaactgaatgtgtacaattaaatgttgattgtaagttcatttcatgatgtagaaatcccgttcattttgacgcttatctacatctataaagttgtacaatctccgcagGTGGAATGGGATGAAATTAATGCAGCCTGGGGTCAGGCTTGCTTGCTTTTGCATACGATGGCACAATACTGTCGTCTAATTTTCAC
                                                                                                     |||  |     |   |||||   | ||  ||   | | | |    || |        ||||||||||||||||| || ||||| |||||||| ||||| ||  |  | ||||| || ||||||||||| || |  || | ||| ||
-----------------------------------------------------------------------------------------------------gtaaga-----gcatatttttctgttt--cttgttttgtgagaccgtcc--ctgtatcagGTGGAATGGGATGAGATCAATGCCGCCTGGGGACAGGCGTGTCTATTGTTGCACACTATGGCACAATATTGCCAACTCAATTTTAC

upper sequence: PP1S51_193V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ13904 (Selaginella moellendorffii), 3'ss of exon 7
gtaagttctctgcttcctgatatagctggatcacatgtattagattgctctaaaaactgaatgtgtacaattaaatgttgattgtaagttcatttcatgatgtagaaatcccgttcattttgacgcttatctacatctataaagttgtacaatctccgcagGTGGAATGGGATGAAATTAATGCAGCCTGGGGTCAGGCTTGCTTGCTTTTGCATACGATGGCACAATACTGTCGTCTAATTTTCAC
                                                                                                        | ||  || |  |||||   | ||  ||   | | | |  |||| |        ||||||||||||||||| || ||||| |||||||| ||||| ||  |  | ||||| || ||||||||||| || |  || | ||| ||
--------------------------------------------------------------------------------------------------------gtaagaccat--atttttctgttt--cttgttttgtgagattgtcc--ctgtatcagGTGGAATGGGATGAGATCAATGCCGCCTGGGGACAGGCGTGTCTATTGTTGCACACTATGGCACAATATTGCCAACTCAATTTTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcccgttcattttgacgcttatctacatctataaagttgtacaatctccgcagGTGGAATGGGATGAAATTAATGCAGCCTGGGGTCAGGCTTGCTTGCTTTTGCATACGATGGCACAATACTGTCGTCTAATTTTCAC
           ttttgac  putative branch site (score: 3)
                                              tctccgc  putative PPT
                            atctataaa  TA-rich tract