1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatttcagaacagtgctccagtgtttctgtaaaccatcaagtaaacatgtctaataccatcaagtaaacaagtctcttatgtttctgtatctgctgacagAGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCACTGAGAAAGGAATTGAAGAGGAAGCGTCAAGGTGGTGATGGACTTAGTGG
species | Physcomitrella patens |
transcript | PP1S4_280V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGTAATGAAAACTTGGAAGCGTTGGATGATATGTATTACTTGGACACAG AGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCACEST: gi|162213778|gb|FC390393.1|FC390393
genomic: TTGTAATGAAAACTTGGAAGCGTTGGATGATATGTATTACTTGGACACAGgtactcgtct ... ctgctgacagAGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCAC
EST: TTGTAATGAAAACTTGGAAGCGTTGGATGATATGTATTACTTGGACACAG AGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCACEST: gi|162174091|gb|FC350294.1|FC350294
genomic: TTGTAATGAAAACTTGGAAGCGTTGGATGATATGTATTACTTGGACACAGgtactcgtct ... ctgctgacagAGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCAC
EST: TTGTAATGAAAACTTGGAAGCGTTGGATGATATGTATTACTTGGACACAG AGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCACEST: gi|162190149|gb|FC365891.1|FC365891
genomic: TTGTAATGAAAACTTGGAAGCGTTGGATGATATGTATTACTTGGACACAGgtactcgtct ... ctgctgacagAGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCAC
EST: TTGTAATGAAAACTTGGAAGCGTTGGATGATATGTATTACTTGGACACAG AGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCACEST: gi|100401098|gb|BY973101.1|BY973101
genomic: TTGTAATGAAAACTTGGAAGCGTTGGATGATATGTATTACTTGGACACAGgtactcgtct ... ctgctgacagAGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCAC
EST: TTGTAATGAAGACTTGGAAGCGTTGGATGATATGTATCACTTGGACACAG AGATGACAGCTGACGA-GACACATTCTGAACCTAGGAGAGAGAAGTTATCA
genomic: TTGTAATGAAAACTTGGAAGCGTTGGATGATATGTATTACTTGGACACAGgtactcgtct ... ctgctgacagAGATGAAAGCAGA-GAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCA
catgtctaataccatcaagtaaacaagtctcttatgtttctgtatctgctgacagAGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCACTGAGAAAGGAATTGAAGAGGAAGCGTCAAGGTGGTGATGGACTTAGTGG
gtctaat putative branch site (score: 3)
ttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttcagaacagtgctccagtgtttctgtaaaccatcaagtaaacatgtctaataccatcaagtaaacaagtctcttatgtttctgtatctgctgacagAGATGAAAGCAGAGAAGACACATTCTGAACCAAGGAGAGAGAAGTTATCACTGAGAAAGGAATTGAAGAGGAAGCGTCAAGGTGGTGATGGACTTAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA