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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaggcacagctaatatcgggtccatagctggttgctttgaaatcaggattgtatgaattcgcttattttcttgatgtggggagctaaattatgttagttggaacgttcttgtgatagcatacttttctgggttatgcttttcagGTGAGGAAATTGACCAGAAGACAATGACGCTATCGACATCATCACCTGATCTTACTGATATTGTGGATAAGGGTCTCTATTTCGCACACTATCTTATGAC

Basic information

species Physcomitrella patens
transcript PP1S49_91V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18334688|gb|BJ166705.1|BJ166705
EST:     ACCTCCCAAGGGCGCCAAGAAATCCAGATCAAAGACACCAGCACTGTTAG                         GTGAGGAAATTGACCAGAAGACAATGACGCTATCGACATCATCACCTGATC
genomic: ACCTCCCAAGGGCGCCAAGAAATCCAGATCAAAGACACCAGCACTGTTAGgtgagtaggc ... tgcttttcagGTGAGGAAATTGACCAGAAGACAATGACGCTATCGACATCATCACCTGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttagttggaacgttcttgtgatagcatacttttctgggttatgcttttcagGTGAGGAAATTGACCAGAAGACAATGACGCTATCGACATCATCACCTGATCTTACTGATATTGTGGATAAGGGTCTCTATTTCGCACACTATCTTATGAC
                                             tgcttttc  CT-rich tract
                             atactttt  TA-rich tract