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gtttgaaatcagcatttatattttattatttttagctgtttgtgagcgtggtattgtcttgatgtatgatgcttcccattttagtatattatatgcttggttgatttacttgagcaacttaatgtaccagaatttgaacctcaacttatcttgcatttccatttttgcagTTGGCTCAAGGAGGGACGGCTGTTGGAACTGGACTCAACACCAAGAAGGG
species | Physcomitrella patens |
transcript | PP1S49_154V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCAATATGGAATAGAGAGAGTCGAGAACACCCTTCCTCGCCTTTATCAG TTGGCTCAAGGAGGGACGGCTGTTGGAACTGGACTCAACACCAAGAAGGGEST: gi|67569924|gb|BJ942748.1|BJ942748
genomic: TGCAATATGGAATAGAGAGAGTCGAGAACACCCTTCCTCGCCTTTATCAGgtttgaaatc ... atttttgcagTTGGCTCAAGGAGGGACGGCTGTTGGAACTGGACTCAACACCAAGAAGGG
EST: TGCAATATGGAATAGAGAGAGTCGAGAACACCCTTCCTCGCCTTTATCAG TTGGCTCAAGGAGGGACGGCTGTTGGAACTGGACTCAACACCAAGAAGGGEST: gi|162193053|gb|FC371477.1|FC371477
genomic: TGCAATATGGAATAGAGAGAGTCGAGAACACCCTTCCTCGCCTTTATCAGgtttgaaatc ... atttttgcagTTGGCTCAAGGAGGGACGGCTGTTGGAACTGGACTCAACACCAAGAAGGG
EST: AATAGAGAGAGTCGAGAACACCCTTCCTCGCCTTTATCAG TTGGCTCAAGGAGGGACGGCTGTTGGAACTGGACTCAACACCAAGAAGGG
genomic: AATAGAGAGAGTCGAGAACACCCTTCCTCGCCTTTATCAGgtttgaaatc ... atttttgcagTTGGCTCAAGGAGGGACGGCTGTTGGAACTGGACTCAACACCAAGAAGGG
aacttaatgtaccagaatttgaacctcaacttatcttgcatttccatttttgcagTTGGCTCAAGGAGGGACGGCTGTTGGAACTGGACTCAACACCAAGAAGGG
acttaat putative branch site (score: 2)
tttccattttt putative PPT
aatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaaatcagcatttatattttattatttttagctgtttgtgagcgtggtattgtcttgatgtatgatgcttcccattttagtatattatatgcttggttgatttacttgagcaacttaatgtaccagaatttgaacctcaacttatcttgcatttccatttttgcagTTGGCTCAAGGAGGGACGGCTGTTGGAACTGGACTCAACACCAAGAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG