1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cgaaatagaattgtcctttaaattaagatttgatcctttaaatcaagcttgtggacagcaaatggttatgtactaaagatggtgggtggttcataatcagTTTGCAATGCACTATTCTTGGGATACGGAGGAGCGAGCACGAAGGGCTTTCCGAAACGTCTCTGCCATTCTACAGCCAGGAGGGTGCTTCATAGGCACCA
species | Physcomitrella patens |
transcript | PP1S49_100V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGAGAAAATTCTTAAAGATGATGGTCTCTTTAATGTCTGCAGTGTTCAG TTTGCAATGCACTATTCTTGGGATACEST: gi|100414488|gb|BY992798.1|BY992798
genomic: TAGAGAAAATTCTTAAAGATGATGGTCTCTTTAATGTCTGCAGTGTTCAGgtacatatgc ... tcataatcagTTTGCAATGCACTATTCTTGGGATAC
EST: TAGAGAAAATTCTTAAAGATGATGGTCTCTTTAATGTCTGCAGTGTTCAG TTTGCAATGCACTATTCTTGGGATACGGAGGAGCGAGCACGAAGGGCTTCC
genomic: TAGAGAAAATTCTTAAAGATGATGGTCTCTTTAATGTCTGCAGTGTTCAGgtacatatgc ... tcataatcagTTTGCAATGCACTATTCTTGGGATACGGAGGAGCGAGCACGAAGGGCTTTC
agcttgtggacagcaaatggttatgtactaaagatggtgggtggttcataatcagTTTGCAATGCACTATTCTTGGGATACGGAGGAGCGAGCACGAAGGGCTTTCCGAAACGTCTCTGCCATTCTACAGCCAGGAGGGTGCTTCATAGGCACCA
tactaaa putative branch site (score: 5)
ttcataat TA-rich tract