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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacgttgtacagagttctctttatctcattccgccctttgcacatatttctgtttgtcttgtgtgctgatgtcttcgtctagcataagcaatagcgagtgtacttaactaatagcaaagtggttttcaatagGTAAAGCCTGAAGATGTTTTACGAGCTCTACGACTCAAATCATTTGACTATCGTATACTTAACCTTCTTCTATATGGCTTGCTCCATGAACCG

Basic information

species Physcomitrella patens
transcript PP1S490_1V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193577|gb|FC370480.1|FC370480
EST:     ATTGGTGTTTGGAGCAGTCCCTTTGTACTGCCCTCTCAACTGGAAAAGAG                         GTAAAGCCTGGAGATGTTTTACGAGCTCTACGACTCAAATCATTTGACTAT
genomic: ATTGGTGTTTGGAGCAGTCCCTTTGTACTGCCCTCTCAACTGGAAAAGAGgcacgttgta ... ttttcaatagGTAAAGCCTGAAGATGTTTTACGAGCTCTACGACTCAAATCATTTGACTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagcataagcaatagcgagtgtacttaactaatagcaaagtggttttcaatagGTAAAGCCTGAAGATGTTTTACGAGCTCTACGACTCAAATCATTTGACTATCGTATACTTAACCTTCTTCTATATGGCTTGCTCCATGAACCG
                            aactaat  putative branch site (score: 2)
                                             ttttc  putative PPT
                          ttaactaata  TA-rich tract