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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgatatgatacctcaaaactcgccaaattccatcacctcagaaatttcattttttgcttactgatgctttgatgtattggcagATTGCCTTCTTGGACTTGGATACGAAGCGACTAAAAAAGATACCAGTCTATTACTCGCTTGACCAACAGATCGTAGACACTTACAAGGCATGTTCTCAAC

Basic information

species Physcomitrella patens
transcript PP1S48_45V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162181423|gb|FC358466.1|FC358466
EST:     CAGCTTCTGTTGCGACGTGCCCAACAACAGGCCAACAGTATGTTAGCAAG                         ATTGCCTTCTTGGACTTGGATACGAAGCGACTAAAAAAGATACCAGTCTAT
genomic: CAGCTTCTGTTGCGACGTGCCCAACAACAGGCCAACAGTATGTTAGCAAGgtaggtgata ... gtattggcagATTGCCTTCTTGGACTTGGATACGAAGCGACTAAAAAAGATACCAGTCTAT
EST: gi|208360338|gb|DC949993.1|DC949993
EST:     CAGCTTCTGTTGCGACGTGCCCAACAACAGGCCAACAGTATGTTAGCAAG                         ATTGCCTTCTTGGACTTGGATACGAAGCGACTAAAAAAGATACCAGTCTAT
genomic: CAGCTTCTGTTGCGACGTGCCCAACAACAGGCCAACAGTATGTTAGCAAGgtaggtgata ... gtattggcagATTGCCTTCTTGGACTTGGATACGAAGCGACTAAAAAAGATACCAGTCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatcacctcagaaatttcattttttgcttactgatgctttgatgtattggcagATTGCCTTCTTGGACTTGGATACGAAGCGACTAAAAAAGATACCAGTCTATTACTCGCTTGACCAACAGATCGTAGACACTTACAAGGCATGTTCTCAAC
           agaaatttcatttttt  TA-rich tract