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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcgtgtgatctaatttctagtccattttagaggttgcgaactgtgaggcacctgcctattggcaagttggttaacagtcagcattgttctgaattgcagGTTGTTACAGATATTCTTCTCCTTCAAAACCAGAAAATAGTGACCTACAAGGGCGATTATGACACATTTGAACGAACTCGTGATGAGCGCGTTCGAAACC

Basic information

species Physcomitrella patens
transcript PP1S47_97V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162199130|gb|FC375822.1|FC375822
EST:     GGCCAAAAACATTGATAGTGGTGTCCCATGCGCGTGAGTTCCTAAATTCG                         GTTGTTACAGATATTCTTCTCCTTCAAAACCAGAAAATAGTGACCTACAAG
genomic: GGCCAAAAACATTGATAGTGGTGTCCCATGCGCGTGAGTTCCTAAATTCGgtgagtggat ... tgaattgcagGTTGTTACAGATATTCTTCTCCTTCAAAACCAGAAAATAGTGACCTACAAG
EST: gi|162174580|gb|FC350235.1|FC350235
EST:     GGCCAAAAACATTGATAGTGGTGTCCCATGCGCGTGAGTTCCTAAATTCG                         GTTGTTACAGATATTCTTCTCCTTC
genomic: GGCCAAAAACATTGATAGTGGTGTCCCATGCGCGTGAGTTCCTAAATTCGgtgagtggat ... tgaattgcagGTTGTTACAGATATTCTTCTCCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggcacctgcctattggcaagttggttaacagtcagcattgttctgaattgcagGTTGTTACAGATATTCTTCTCCTTCAAAACCAGAAAATAGTGACCTACAAGGGCGATTATGACACATTTGAACGAACTCGTGATGAGCGCGTTCGAAACC
                        ggttaac  putative branch site (score: 3)
                                       ttgttct  putative PPT