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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaaagaacttggaggacagatgtcagttcatcaagttcatcgactctacgcttacacttgcatgtgtctggcttgtttaaacaatgattggaacttcagGTGCCAAAAATTACTATCGTGGTGGGAGGAAGCCATGGAGCTGGCAATTATGGAATGTGTGGGAGGGCATACAGTCCCAACTTTCTCTTCATGTGGCCCA

Basic information

species Physcomitrella patens
transcript PP1S47_126V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179960|gb|FC356031.1|FC356031
EST:     GGATTGCAAAAGCAGGTGCTAAGATGGTTATGGCTGTTGCATGTGCCAAG                         GTGCCAAAAATTACTATCGTGGTGGGAGGAAGCCATGGAGCTGGCAATTAT
genomic: GGATTGCAAAAGCAGGTGCTAAGATGGTTATGGCTGTTGCATGTGCCAAGgtgggtattc ... ggaacttcagGTGCCAAAAATTACTATCGTGGTGGGAGGAAGCCATGGAGCTGGCAATTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacgcttacacttgcatgtgtctggcttgtttaaacaatgattggaacttcagGTGCCAAAAATTACTATCGTGGTGGGAGGAAGCCATGGAGCTGGCAATTATGGAATGTGTGGGAGGGCATACAGTCCCAACTTTCTCTTCATGTGGCCCA
    cgcttac  putative branch site (score: 3)
                               tttaaacaatgatt  TA-rich tract