1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactttttagtttccacaaagcgcaccacgatgatcgttcataaattaatttgttggaacgttgtcctttgttctagacatagctaatattccgcattctctgatcaagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGCGCGTGCAG
species | Physcomitrella patens |
transcript | PP1S46_64V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTTCATCTGGGGGCATGTTAACTGAAAACCTTCAATGAAAATCTGCAG TACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGEST: gi|208371442|gb|DC955778.1|DC955778
genomic: AGTTTCATCTGGGGGCATGTTAACTGAAAACC-TCAATGAAAATCTGCAGgtacttttta ... aagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAG
EST: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAG TACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGEST: gi|162159314|gb|FC334621.1|FC334621
genomic: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAGgtacttttta ... aagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAG
EST: AAACCTCAATGAAAATCTGCAG TACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGEST: gi|208395871|gb|DC920321.1|DC920321
genomic: AAACCTCAATGAAAATCTGCAGgtacttttta ... aagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAG
EST: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAG TACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGEST: gi|208366470|gb|DC955574.1|DC955574
genomic: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAGgtacttttta ... aagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAG
EST: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAG TACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGEST: gi|162159315|gb|FC334622.1|FC334622
genomic: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAGgtacttttta ... aagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAG
EST: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAG TACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGEST: gi|208356778|gb|DC906440.1|DC906440
genomic: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAGgtacttttta ... aagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAG
EST: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAG TACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGEST: gi|162189180|gb|FC365987.1|FC365987
genomic: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAGgtacttttta ... aagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAG
EST: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAG TACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAG
genomic: CAGTTTCATCTGGGGGCATGTTAACTGAAAACCTCAATGAAAATCTGCAGgtacttttta ... aagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAG
ttgtcctttgttctagacatagctaatattccgcattctctgatcaagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGCGCGTGCAG
taatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttttagtttccacaaagcgcaccacgatgatcgttcataaattaatttgttggaacgttgtcctttgttctagacatagctaatattccgcattctctgatcaagtgagcagTACGAGGACAAGAATGTTTTTGATGGAACGACTCAATATGCGCGCAACAAGCGCGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA