1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgttgccgtttaggccttgagttggattttggtgctttgtgtgggacctctctctgtatctggttttgcacagccttgattcgtaaccaagtaaattggattggcctgggggttttgcttgggctgaagctgctcatacatgcagtacttaatttgtgatgcttctgatttaccagGTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCATGCTGTCTCGGGCTGGTTTTTAGAGCATGCTGAGCCATTGCTTAAAGTGT
species | Physcomitrella patens |
transcript | PP1S456_6V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGG GTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCATEST: gi|162183913|gb|FC360219.1|FC360219
genomic: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGGgtatgtgttg ... gatttaccagGTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCAT
EST: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGG GTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCATEST: gi|162197216|gb|FC374180.1|FC374180
genomic: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGGgtatgtgttg ... gatttaccagGTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCAT
EST: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGG GTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCATEST: gi|100406065|gb|BY991522.1|BY991522
genomic: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGGgtatgtgttg ... gatttaccagGTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCAT
EST: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGG GTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCATEST: gi|162212751|gb|FC388551.1|FC388551
genomic: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGGgtatgtgttg ... gatttaccagGTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCAT
EST: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGG GTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCATEST: gi|162255777|gb|FC431437.1|FC431437
genomic: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGGgtatgtgttg ... gatttaccagGTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCAT
EST: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGG GTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCAT
genomic: TTGAAGCTGCTATTGATAGGATCATTGGTGGCCTAGAGAAAAAGAAGCGGgtatgtgttg ... gatttaccagGTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCAT
ggctgaagctgctcatacatgcagtacttaatttgtgatgcttctgatttaccagGTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCATGCTGTCTCGGGCTGGTTTTTAGAGCATGCTGAGCCATTGCTTAAAGTGT
ttctgat putative branch site (score: 3)
tacttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgttgccgtttaggccttgagttggattttggtgctttgtgtgggacctctctctgtatctggttttgcacagccttgattcgtaaccaagtaaattggattggcctgggggttttgcttgggctgaagctgctcatacatgcagtacttaatttgtgatgcttctgatttaccagGTAATTAGCAAGGAAGAAAGGAGAACAGTGGCATATCATGAAGCTGGCCATGCTGTCTCGGGCTGGTTTTTAGAGCATGCTGAGCCATTGCTTAAAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG