1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...gagattgttttcaaaccataatcaattgacaagcatgtgcacaatgtttttgtgttgattatgaatttgactcttgggtcttgttgtttttttaatgcagGAGGAATTGCAGACGCAGATCAAGGATTTACTTGGAGAGAAAACTGCGGCGGATGATGAAAAGCTAGTGAAGAAAAAGAAGGATGCGAAACCAAGGGTGG
species | Physcomitrella patens |
transcript | PP1S43_166V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGTCACAGGTGCGGTCGAAGTTACCTTGGGCAGATGGAAAACTGGCAATG GAGGAATTGCAGACGCAGATCAAGGATTTACTTGGAGAGAAAACTGCGGCGEST: gi|162254785|gb|FC430762.1|FC430762
genomic: TGTCACAGGTGCGGTCGAAGTTACCTTGGGCAGATGGAAAACTGGCAATGgtatggttct ... tttaatgcagGAGGAATTGCAGACGCAGATCAAGGATTTACTTGGAGAGAAAACTGCGGCG
EST: TGTCACAGGTGCGGTCGAAGTTACCTTGGGCAGATGGAAAACTGGCAATG GAGGAATTGCAGACGCAGATCAAGGATTTACTTGGAGAGAAAACTGCGGCG
genomic: TGTCACAGGTGCGGTCGAAGTTACCTTGGGCAGATGGAAAACTGGCAATGgtatggttct ... tttaatgcagGAGGAATTGCAGACGCAGATCAAGGATTTACTTGGAGAGAAAACTGCGGCG
gtttttgtgttgattatgaatttgactcttgggtcttgttgtttttttaatgcagGAGGAATTGCAGACGCAGATCAAGGATTTACTTGGAGAGAAAACTGCGGCGGATGATGAAAAGCTAGTGAAGAAAAAGAAGGATGCGAAACCAAGGGTGG
ttttaat putative branch site (score: 4)
tcttgttgttttttt CT-rich tract
ttgttgtttttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagattgttttcaaaccataatcaattgacaagcatgtgcacaatgtttttgtgttgattatgaatttgactcttgggtcttgttgtttttttaatgcagGAGGAATTGCAGACGCAGATCAAGGATTTACTTGGAGAGAAAACTGCGGCGGATGATGAAAAGCTAGTGAAGAAAAAGAAGGATGCGAAACCAAGGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - gtgcaca