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gtaagtgcatcgtagatatttttaattttcatctttggcaagtgctttcctataatgcgattcatctttggtgtgtacttcttaatgttgtgcttgtgtttaagtcatttctccttgttatcagAGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATTTCTTGAGAGGGAG
species | Physcomitrella patens |
transcript | PP1S430_12V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTG AGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATTEST: gi|100440623|gb|BY962310.1|BY962310
genomic: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTGgtaagtgcat ... ttgttatcagAGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATT
EST: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTG AGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATTEST: gi|162159612|gb|FC335790.1|FC335790
genomic: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTGgtaagtgcat ... ttgttatcagAGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATT
EST: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTG AGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATTEST: gi|162199548|gb|FC373200.1|FC373200
genomic: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTGgtaagtgcat ... ttgttatcagAGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATT
EST: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTG AGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATTEST: gi|162240779|gb|FC416345.1|FC416345
genomic: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTGgtaagtgcat ... ttgttatcagAGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATT
EST: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTG AGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATTEST: gi|162257199|gb|FC433075.1|FC433075
genomic: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTGgtaagtgcat ... ttgttatcagAGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATT
EST: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTG AGCAAAGCAGGAGGGACGATCTTGAGTCTNCT-GGATATGTCCTTATGTAT
genomic: CCTCACTGGGACTGCACGATATGCCAGCATCAACACCCATCTTGGTATTGgtaagtgcat ... ttgttatcagAGCAAAGCAGGAGGGACGATCTTGAGTCT-CTTGGATATGTCCTTATGTAT
ggtgtgtacttcttaatgttgtgcttgtgtttaagtcatttctccttgttatcagAGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATTTCTTGAGAGGGAG
tcttaat putative branch site (score: 8)
tcatttctccttgtt putative PPT
ttcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcatcgtagatatttttaattttcatctttggcaagtgctttcctataatgcgattcatctttggtgtgtacttcttaatgttgtgcttgtgtttaagtcatttctccttgttatcagAGCAAAGCAGGAGGGACGATCTTGAGTCTCTTGGATATGTCCTTATGTATTTCTTGAGAGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG