1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcccatgctacccccgaacacttcacctgactgcactgcagcgattttttttcaaatcctttttaatcgaccctgacaccatatcgtgtacatgatacagGCTGCAGATAGGTTTCAGGCTGTGTACCCCATAGTTAAGGAGCTTGCGTTAGCAGGGTTACAGAATAGCAAAACTACTCGACCAGTGGCTCAGCAGCTTC
species | Physcomitrella patens |
transcript | PP1S42_185V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGATTCTGTGATGCGGGCTTCCTTTCCTACTGAGTCTGCTCGGACTAAG GCTGCAGATAGGTTTCAGGCTGTGTACCCCATAGTTAAGGAGCTTGCGTTAEST: gi|208364795|gb|DC954497.1|DC954497
genomic: TTGATTCTGTGATGCGGGCTTCCTTTCCTACTGAGTCTGCTCGGACTAAGgtacagtttg ... catgatacagGCTGCAGATAGGTTTCAGGCTGTGTACCCCATAGTTAAGGAGCTTGCGTTA
EST: TTGATTCTGTGATGC-GGCNTCCTTTCCTACTGAGTCTGCTCGGACTAAG GCTGCAGATAGGTTTCAGGCTGTGTACCCCATAGTTAAGGAGCTTGCGTTA
genomic: TTGATTCTGTGATGCGGGCTTCCTTTCCTACTGAGTCTGCTCGGACTAAGgtacagtttg ... catgatacagGCTGCAGATAGGTTTCAGGCTGTGTACCCCATAGTTAAGGAGCTTGCGTTA
tttttttcaaatcctttttaatcgaccctgacaccatatcgtgtacatgatacagGCTGCAGATAGGTTTCAGGCTGTGTACCCCATAGTTAAGGAGCTTGCGTTAGCAGGGTTACAGAATAGCAAAACTACTCGACCAGTGGCTCAGCAGCTTC
ccctgac putative branch site (score: 8)
aaatcctttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccatgctacccccgaacacttcacctgactgcactgcagcgattttttttcaaatcctttttaatcgaccctgacaccatatcgtgtacatgatacagGCTGCAGATAGGTTTCAGGCTGTGTACCCCATAGTTAAGGAGCTTGCGTTAGCAGGGTTACAGAATAGCAAAACTACTCGACCAGTGGCTCAGCAGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
-cccatgc
- - - - - - - - - - - - - - - ctgcact