1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gccgcaccaaccgcgttaaccataatcattttctactcatcaccgttgcgtgttttacgatcctactcaagccctgttcatggtgatgatgatgatgcagGCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAAGTATTTTGGGGAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCA
species | Physcomitrella patens |
transcript | PP1S42_152V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTAAAAATGTGGACGTCCGAGGATGGATTTCGATCTTTGATTTTTTGCAG GCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAAEST: gi|37825973|gb|BJ584039.1|BJ584039
genomic: TTAAAAATGTGGACGTCCGAGGATGGATTTCGATCTTTGATTTTTTGCAGgttggtttta ... gatgatgcagGCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAA
EST: TTAAAAATGTGGACGTCCGAGGATGGATTTCGATCTTTGATTTTTTGCAG GCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAAEST: gi|37827183|gb|BJ585195.1|BJ585195
genomic: TTAAAAATGTGGACGTCCGAGGATGGATTTCGATCTTTGATTTTTTGCAGgttggtttta ... gatgatgcagGCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAA
EST: TTAAAAATGTGGACGTCCGAGGATGGATTTCGATCTTTGATTTTTTGCAG GCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAAEST: gi|37834361|gb|BJ592373.1|BJ592373
genomic: TTAAAAATGTGGACGTCCGAGGATGGATTTCGATCTTTGATTTTTTGCAGgttggtttta ... gatgatgcagGCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAA
EST: TTAAAAATGTGGACGTCCGAGGATGGATTTCGATCTTTGATTTTTTGCAG GCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAA
genomic: TTAAAAATGTGGACGTCCGAGGATGGATTTCGATCTTTGATTTTTTGCAGgttggtttta ... gatgatgcagGCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAA
ttgcgtgttttacgatcctactcaagccctgttcatggtgatgatgatgatgcagGCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAAGTATTTTGGGGAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCA
tgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgcaccaaccgcgttaaccataatcattttctactcatcaccgttgcgtgttttacgatcctactcaagccctgttcatggtgatgatgatgatgcagGCATACTACCCGGAGAGGTTAGGGAGACTCTTCATTATCCATGTGCCAAAAGTATTTTGGGGAGCATGGAAGCTCGTGTATCCTTTCATCGATAAAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG