1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gaagggtctaattacattatcgttgcacaacgtattgcctatgatttaaccttgagtgtatcgagaacttgaaatgaattcctctcatggtttggagcagGTTCGCTTTCTGGCTCGGTCTTTCGTTGTTCCGGGGAACTACCAAGGACAGCAAAGCAATGGCATGCGATGGCCTTACGGTCCG
species | Physcomitrella patens |
transcript | PP1S41_177V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGAGGTCACTGTTACACAAAAATTTCTCGAGAACTTTTCTGGTGATCAG GTTCGCTTTCTGGCTCGGTCTTTCGTTGTTCCGGGGAACTACCAAGGACAGEST: gi|162230102|gb|FC406250.1|FC406250
genomic: GGGAGGTCACTGTTACACAAAAATTTCTCGAGAACTTTTCTGGTGATCAGgtataattat ... tttggagcagGTTCGCTTTCTGGCTCGGTCTTTCGTTGTTCCGGGGAACTACCAAGGACAG
EST: GGGAGGTCACTGTTACACAAAAATTTCTCGAGAACTTTTCTGGTGATCAG GTTCGCTTTCTGGCTCGGTCTTTCGTTGTTCCGGGGAACTACCAAGGACAGEST: gi|162249310|gb|FC423980.1|FC423980
genomic: GGGAGGTCACTGTTACACAAAAATTTCTCGAGAACTTTTCTGGTGATCAGgtataattat ... tttggagcagGTTCGCTTTCTGGCTCGGTCTTTCGTTGTTCCGGGGAACTACCAAGGACAG
EST: GGGAGGTCACTGTTACACAAAAATTTCTCGAGAACTTTTCTGGTGATCAG GTTCGCTTTCTGGCTCGGTCTTTCGTTGTTCCGGGGAACTACCAAGGACAGEST: gi|100389012|gb|BY952216.1|BY952216
genomic: GGGAGGTCACTGTTACACAAAAATTTCTCGAGAACTTTTCTGGTGATCAGgtataattat ... tttggagcagGTTCGCTTTCTGGCTCGGTCTTTCGTTGTTCCGGGGAACTACCAAGGACAG
EST: GGGAGGTCACTGTTACACAAAAATTTCTCGAGAACTTTTCTGGTGATCAG GTTCGCTTTCTGGCTCGGTCTTTCGTTTGT-CCGGGGAACTACCAAGGACA
genomic: GGGAGGTCACTGTTACACAAAAATTTCTCGAGAACTTTTCTGGTGATCAGgtataattat ... tttggagcagGTTCGCTTTCTGGCTCGGTCTTTCGTT-GTTCCGGGGAACTACCAAGGACA
ttaaccttgagtgtatcgagaacttgaaatgaattcctctcatggtttggagcagGTTCGCTTTCTGGCTCGGTCTTTCGTTGTTCCGGGGAACTACCAAGGACAGCAAAGCAATGGCATGCGATGGCCTTACGGTCCG
atttaac putative branch site (score: 13)
aaatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagggtctaattacattatcgttgcacaacgtattgcctatgatttaaccttgagtgtatcgagaacttgaaatgaattcctctcatggtttggagcagGTTCGCTTTCTGGCTCGGTCTTTCGTTGTTCCGGGGAACTACCAAGGACAGCAAAGCAATGGCATGCGATGGCCTTACGGTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - ttgcaca