1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atctttcgagcctgcactggtcactccactttttatcctgtcaatccattttcatgctttatacacaaagcttaacatgaattttgcttatgactgacagTTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGATATTGGTGATGCGACTGATCCTGCTACTTATTTCGAACCAG
species | Physcomitrella patens |
transcript | PP1S41_163V6.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGACGGGAAGGCAGAGCGTATGCAACGTGCGGCTGAGCGTGCTATG TTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGATEST: gi|208351989|gb|DC925798.1|DC925798
genomic: TTTTTGACGGGAAGGCAGAGCGTATGCAACGTGCGGCTGAGCGTGCTATGgtgagttcat ... tgactgacagTTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGAT
EST: TTTTTGACGGGAAGGCAGAGCGTATGCAACGTGCGGCTGAGCGTGCTATG TTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGATEST: gi|100355722|gb|BY965113.1|BY965113
genomic: TTTTTGACGGGAAGGCAGAGCGTATGCAACGTGCGGCTGAGCGTGCTATGgtgagttcat ... tgactgacagTTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGAT
EST: TTTTTGACGGGGAGGCAGAGCGTATGCAACGTGCGGCTGAGCGTGCTATG TTATCTGCACCCCCGG-TTACAGCGAGCATCACACTGGTTATGCAATCGATEST: gi|37852321|gb|BJ610329.1|BJ610329
genomic: TTTTTGACGGGAAGGCAGAGCGTATGCAACGTGCGGCTGAGCGTGCTATGgtgagttcat ... tgactgacagTTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGAT
EST: TTTTTGACGGGAAGGCAGAGCGTATGCAACGTGCGGCTGAGCGTGCTATG TTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGAT
genomic: TTTTTGACGGGAAGGCAGAGCGTATGCAACGTGCGGCTGAGCGTGCTATGgtgagttcat ... tgactgacagTTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGAT
ccattttcatgctttatacacaaagcttaacatgaattttgcttatgactgacagTTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGATATTGGTGATGCGACTGATCCTGCTACTTATTTCGAACCAG
gcttaac putative branch site (score: 7)
ttaacatgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctttcgagcctgcactggtcactccactttttatcctgtcaatccattttcatgctttatacacaaagcttaacatgaattttgcttatgactgacagTTATCTGCACCCCCGGGTTACAGCGAGCATCACACTGGTTATGCAATCGATATTGGTGATGCGACTGATCCTGCTACTTATTTCGAACCAG
- - - - - -ctgcact