1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgtgctttaattcctaccatcctttgaatcattgttgttttttaaacttcccagagcttgctactcaatgctatgtgattgcgttcgttggtcgttgatttagtattcgtttcattgcagATCCAGAACACAACAGTAGGGATTCGCAAAATCGTAGTTGCTGTTTGCGACACTACGTGCCAGCGAGGGGCCAGGCTGGCAGCTGCTGGTATTGTGGGAA
species | Physcomitrella patens |
transcript | PP1S401_23V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAGTAGCGACCTAAAAGTAGTTGCAGAAGTTCTGGAAAGACTATATGGA ATCCAGAACACAACAGTAGGGATTCGCAAAATCGTAGTTGCTGTTTGCGACEST: gi|100362815|gb|BY947542.1|BY947542
genomic: ACAGTAGCGACCTAAAAGTAGTTGCAGAAGTTCTGAAAAGACTATATGGAgtacgtgctt ... ttcattgcagATCCAGAACACAACAGTAGGGATTCGCAAAATCGTAGTTGCTGTTTGCGAC
EST: CAGTAGCGACCTAAAAGTAGTTGCAGAAAGT-CTGAAAAGACTATATGGA ATCCAGAAACACA-CAGGTAGGGATTCGCAAAATCGTAGTTGCTGTTTGCGEST: gi|162175737|gb|FC352039.1|FC352039
genomic: CAGTAGCGACCTAAAAGTAGTTGCAGAA-GTTCTGAAAAGACTATATGGAgtacgtgctt ... ttcattgcagATCCAGAA-CACAACAG-TAGGGATTCGCAAAATCGTAGTTGCTGTTTGCG
EST: ACAGTAGCGACCTAAAAGTAGTTGCAGAAGTTCTGAAAAGACTATATGGA ATCCAGAACACAACAGTAGGGATTCGCAAAATCGTAGTTGCTGTTTGCGAC
genomic: ACAGTAGCGACCTAAAAGTAGTTGCAGAAGTTCTGAAAAGACTATATGGAgtacgtgctt ... ttcattgcagATCCAGAACACAACAGTAGGGATTCGCAAAATCGTAGTTGCTGTTTGCGAC
caatgctatgtgattgcgttcgttggtcgttgatttagtattcgtttcattgcagATCCAGAACACAACAGTAGGGATTCGCAAAATCGTAGTTGCTGTTTGCGACACTACGTGCCAGCGAGGGGCCAGGCTGGCAGCTGCTGGTATTGTGGGAA
cgttgat putative branch site (score: 2)
ttcgtttc putative PPT
atttagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgctttaattcctaccatcctttgaatcattgttgttttttaaacttcccagagcttgctactcaatgctatgtgattgcgttcgttggtcgttgatttagtattcgtttcattgcagATCCAGAACACAACAGTAGGGATTCGCAAAATCGTAGTTGCTGTTTGCGACACTACGTGCCAGCGAGGGGCCAGGCTGGCAGCTGCTGGTATTGTGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT