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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtagcaatcatcctactttttgcaaagttgaagactcagaatttgtgctccaactaattattagctaattagttttacttttccctccgcaacaatgcattgttcagtgtatgtgaattttgaagcaaaatatcccacactgatattaggagattatttttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG

Basic information

species Physcomitrella patens
transcript PP1S3_353V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208349639|gb|DC922029.1|DC922029
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208400784|gb|DC925064.1|DC925064
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCGTGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208396009|gb|DC915769.1|DC915769
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162219036|gb|FC394931.1|FC394931
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162242107|gb|FC414475.1|FC414475
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208375064|gb|DC956432.1|DC956432
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162234770|gb|FC410595.1|FC410595
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162212517|gb|FC388493.1|FC388493
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208381938|gb|DC923448.1|DC923448
EST:     ATAACAACCATCANGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGNCCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|18341156|gb|BJ173189.1|BJ173189
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|18337921|gb|BJ169945.1|BJ169945
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162152466|gb|FC328029.1|FC328029
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208384341|gb|DC928092.1|DC928092
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162174027|gb|FC350542.1|FC350542
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162225092|gb|FC401716.1|FC401716
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|37848110|gb|BJ606118.1|BJ606118
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208366354|gb|DC947564.1|DC947564
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162160439|gb|FC337440.1|FC337440
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|37826154|gb|BJ584166.1|BJ584166
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162198043|gb|FC372070.1|FC372070
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|37832850|gb|BJ590862.1|BJ590862
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|37831516|gb|BJ589528.1|BJ589528
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|67696778|gb|BJ957011.1|BJ957011
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208352003|gb|DC925812.1|DC925812
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|37821601|gb|BJ579667.1|BJ579667
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|37851324|gb|BJ609332.1|BJ609332
EST:     TAACCAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: TAA-CAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162196447|gb|FC373047.1|FC373047
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162234771|gb|FC410596.1|FC410596
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208398319|gb|DC920718.1|DC920718
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162277339|gb|FC453145.1|FC453145
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|37832471|gb|BJ590483.1|BJ590483
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162196446|gb|FC373046.1|FC373046
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162198044|gb|FC372071.1|FC372071
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|67578813|gb|BJ950980.1|BJ950980
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162207902|gb|FC383608.1|FC383608
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208356230|gb|DC918428.1|DC918428
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|37853129|gb|BJ611137.1|BJ611137
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162277340|gb|FC453146.1|FC453146
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208352941|gb|DC921811.1|DC921811
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162242106|gb|FC414474.1|FC414474
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208386602|gb|DC952783.1|DC952783
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|37835063|gb|BJ593075.1|BJ593075
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162190689|gb|FC367575.1|FC367575
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162199210|gb|FC374630.1|FC374630
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162269380|gb|FC445248.1|FC445248
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|18333016|gb|BJ165030.1|BJ165030
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162171822|gb|FC348972.1|FC348972
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162207901|gb|FC383607.1|FC383607
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208381682|gb|DC919724.1|DC919724
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162152467|gb|FC328030.1|FC328030
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|162225093|gb|FC401717.1|FC401717
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
EST: gi|208352552|gb|DC918261.1|DC918261
EST:     ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAG                         GTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT
genomic: ATAACAACCATCACGAAGGTTTTATGAACTTCATGCATCGTGATGAGGAGgtaagtgtag ... ttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattttgaagcaaaatatcccacactgatattaggagattatttttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG
                       cactgat  putative branch site (score: 3)
                                       ttattttt  putative PPT
                            atattaggagattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgtagcaatcatcctactttttgcaaagttgaagactcagaatttgtgctccaactaattattagctaattagttttacttttccctccgcaacaatgcattgttcagtgtatgtgaattttgaagcaaaatatcccacactgatattaggagattatttttatatgcagGTGAATTATTTTCCGTCACGATTTGACCCCGTTCGCCACTCAGAACGCGTTCCAGTTTCACAGAGCAGACTCTTAGGAATCAGGGAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
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