1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...cttctgcacttcacaggtcaaagatgttaatgttcttagtttttcaacgtttgttgaagagtcatgtcataatgacgtgttttcatttcttcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAG
species | Physcomitrella patens |
transcript | PP1S39_248V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATGTCTTCCAAAATTATTGGGCCTGAATCCGANNNNNNNNGCAAAGATG GTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGEST: gi|100360990|gb|BY946858.1|BY946858
genomic: CATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTT-GCAAAGATGgtgtgtacct ... tcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGG
EST: ATGTCTTCCAAAATTATTGGGCCTGAATCCGANNNNNNNNGNCAA-GATG GTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTEST: gi|208347324|gb|DC909715.1|DC909715
genomic: ATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTT-G-CAAAGATGgtgtgtacct ... tcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGT
EST: GCATGTCTTCCAAAATTATTGGGCCTGAATCCGANNNNNNNGCAAAGATG GTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTEST: gi|100417876|gb|BY993228.1|BY993228
genomic: GCATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTTGCAAAGATGgtgtgtacct ... tcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTT
EST: GCATGTCTTCCAAAATTATTAGGCCTGAATCCGANNNNNNNGCAAAGATG GTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTEST: gi|208360034|gb|DC934923.1|DC934923
genomic: GCATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTTGCAAAGATGgtgtgtacct ... tcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTT
EST: GCATGTCTTCCAAAATTATTGGGCCTGAATCCGANNNNNNNGCAAAGATG GTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTEST: gi|100449912|gb|CJ973999.1|CJ973999
genomic: GCATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTTGCAAAGATGgtgtgtacct ... tcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTT
EST: GCATGTCTTCCCAAATTATTGGGCCTGAATCCGATTTTTT-GCAA-GATG GTGGTTGATGCTGTACA-GCTATCA-GGCTACTTCTGAEST: gi|67719559|gb|BJ969818.1|BJ969818
genomic: GCATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTTGCAAAGATGgtgtgtacct ... tcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGA
EST: CATGTCTTCCAAAATTATTGGGCCTGAATCCGANNNNNNNNGCAAAGATG GTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGT
genomic: CATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTT-GCAAAGATGgtgtgtacct ... tcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGT
aacgtttgttgaagagtcatgtcataatgacgtgttttcatttcttcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAG
ttttcatttcttcatt CT-rich tract
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctgcacttcacaggtcaaagatgttaatgttcttagtttttcaacgtttgttgaagagtcatgtcataatgacgtgttttcatttcttcattaacagGTGGTTGATGCTGTACAAGCTATCAAGGCTACTTCTGATAGAGGCGACGTTAGATATCCCATTAAG
-ttctgca
- - - - cttcaca
- - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa