1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacttcgtctaattttctgtgcatacaatccatttttatttttattttcagacgcttacatttagaattgaatttcatgcattttggaaaattctcatttcctgaaatcgtcttacttctacttggttttgttcttttttgtcaaaacagGGGGATGAATTACTTGCATGAACACAAACCTGATCCGATAATCCACCGTGCTCTTAAGCCCAG
species | Physcomitrella patens |
transcript | PP1S392_39V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAACGTCTGGATCCGGAAAGGGCAGTGGCGTATGCGCTTGATATTGCCAG GGGGATGAATTACTTGCATGAACACAAACCTGATCCGATAATCCACCGTGCEST: gi|37845628|gb|BJ603636.1|BJ603636
genomic: AAACGTCTGGATCCGGAAAGGGCAGTGGCGTATGCGCTTGATATTGCCAGgtacttcgtc ... gtcaaaacagGGGGATGAATTACTTGCATGAACACAAACCTGATCCGATAATCCACCGTGC
EST: GCGTATGCGCTTGATATTGCCAG GGGGATGAATTACTTGCATGANCACAAACCTGATCCGATAATCCACCGTGCEST: gi|19784538|gb|BQ040192.1|BQ040192
genomic: GCGTATGCGCTTGATATTGCCAGgtacttcgtc ... gtcaaaacagGGGGATGAATTACTTGCATGAACACAAACCTGATCCGATAATCCACCGTGC
EST: TCCGGAAAGGGCAGTGGCGTATGCGCTTGATATTGCCAG GGGGATGAATTACTTGCATGAACACAAACCTGATCCGATAATCCACCGTGCEST: gi|162172776|gb|FC348365.1|FC348365
genomic: TCCGGAAAGGGCAGTGGCGTATGCGCTTGATATTGCCAGgtacttcgtc ... gtcaaaacagGGGGATGAATTACTTGCATGAACACAAACCTGATCCGATAATCCACCGTGC
EST: AAACGTCTGGATCCGGAAAGGGCAGTGGCGTATGCGCTTGATATTGCCAG GGGGATGAATTACTTGCATGAACACAAACCTGATCCGATAATCCACCGTGC
genomic: AAACGTCTGGATCCGGAAAGGGCAGTGGCGTATGCGCTTGATATTGCCAGgtacttcgtc ... gtcaaaacagGGGGATGAATTACTTGCATGAACACAAACCTGATCCGATAATCCACCGTGC
catttcctgaaatcgtcttacttctacttggttttgttcttttttgtcaaaacagGGGGATGAATTACTTGCATGAACACAAACCTGATCCGATAATCCACCGTGCTCTTAAGCCCAG
gtcttac putative branch site (score: 8)
ttttgttcttttttgt putative PPT
ttttgttctttttt TA-rich tract