Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattctggatgactctctacggaggttactgccactcctgtcattccgtttcactttcaccaatactagtaaggaaatagattccgagtgacagccgagcttaaccctagacgtcacctatcatcctgcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCCGGCTACAGCAAGGAAGACAAGTCCTTGAATGCCGAGATTCACCGGAAGT

Basic information

species Physcomitrella patens
transcript PP1S38_329V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S38_329V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ17161 (Selaginella moellendorffii), 3'ss of exon 6
gtaagtattctggatgactctctacggaggttactgccactcctgtcattccgtttcactttcaccaatactagtaaggaaatagattccgagtgacagccgagcttaacc-ctagacgtcacctatcatcctgcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCCGGCTACAGCAAGGAAGACAAGTCCTTGAATGCCGAGATTCACCGGAAGT
                                                                                      ||    | |     |||| |   |   || |      || |  | ||   ||  |||||||| ||||| || ||  ||||  | || |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||  | ||||||||||
-------------------------------------------------------------------------------------gtttgtcgagtttttcgagttcctctgttacaaagtttctttttttcttgcttcacagGGTGCATTGGACGGTGGACTAGACATCCCGCACAGCGAGAAGCGTTTCGCCGGCTACAGCAAGGAGGACAAGTCCCTGAATGCCGAAGTGCACCGGAAGT

upper sequence: PP1S38_329V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ31187 (Selaginella moellendorffii), 3'ss of exon 6
gtaagtattctggatgactctctacggaggttactgccactcctgtcattccgtttcactttcaccaatactagtaaggaaatagattccgagtgacagccgagcttaacc-ctagacgtcacctatcatcctgcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCCGGCTACAGCAAGGAAGACAAGTCCTTGAATGCCGAGATTCACCGGAAGT
                                                                                      ||    | |    ||||| |   |   || |      || |  | ||   ||  |||||||| ||||| || ||  ||||| | || ||||||||||| || || ||||||||||||||||| ||||||||| ||||||||||  | ||||||||||
-------------------------------------------------------------------------------------gtttgtcgagttttccgagttcctctgttacaaagtttctttttttcttacttcacagGGTGCATTGGACGGTGGACTAGATATCCCGCACAGCGAGAAACGTTTTGCCGGCTACAGCAAGGAGGACAAGTCCCTGAATGCCGAAGTGCACCGGAAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374993|gb|DC956403.1|DC956403
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208389889|gb|DC937720.1|DC937720
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208362062|gb|DC950497.1|DC950497
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162215586|gb|FC391665.1|FC391665
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|37830926|gb|BJ588938.1|BJ588938
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|100372326|gb|BY985544.1|BY985544
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162279516|gb|FC455827.1|FC455827
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162245052|gb|FC422085.1|FC422085
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208389794|gb|DC937429.1|DC937429
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGG-TTTAGATGTTCCTCACAGCGAGAAGCGCTTCGC
EST: gi|162208025|gb|FC384220.1|FC384220
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208380996|gb|DC919878.1|DC919878
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|19789832|gb|BQ041538.1|BQ041538
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCAC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCAC
EST: gi|162232208|gb|FC408057.1|FC408057
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GATGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162239200|gb|FC416482.1|FC416482
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162216779|gb|FC393612.1|FC393612
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208364389|gb|DC950690.1|DC950690
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|19779720|gb|BQ039469.1|BQ039469
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162233764|gb|FC410030.1|FC410030
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162208344|gb|FC384656.1|FC384656
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67573430|gb|BJ946254.1|BJ946254
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|19788553|gb|BQ040790.1|BQ040790
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|37826504|gb|BJ584516.1|BJ584516
EST:     GGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: GGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|22491783|gb|BU051706.1|BU051706
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162266657|gb|FC442836.1|FC442836
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208380836|gb|DC923318.1|DC923318
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162208026|gb|FC384221.1|FC384221
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|18339121|gb|BJ171147.1|BJ171147
EST:     TGAGGACTACCACCGGAAACAGGGTTTTCGNAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162279515|gb|FC455826.1|FC455826
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162232207|gb|FC408056.1|FC408056
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GATGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208380825|gb|DC923307.1|DC923307
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208389761|gb|DC938323.1|DC938323
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208366885|gb|DC951372.1|DC951372
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208349865|gb|DC905989.1|DC905989
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67716531|gb|BJ966791.1|BJ966791
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162234040|gb|FC410722.1|FC410722
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208397433|gb|DC916359.1|DC916359
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|37843754|gb|BJ601762.1|BJ601762
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162233763|gb|FC410029.1|FC410029
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162273382|gb|FC449831.1|FC449831
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162273383|gb|FC449832.1|FC449832
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208346882|gb|DC905426.1|DC905426
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208382321|gb|DC919309.1|DC919309
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208386339|gb|DC932835.1|DC932835
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67709595|gb|BJ965411.1|BJ965411
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGTAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|19788241|gb|BQ040741.1|BQ040741
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67726492|gb|BJ976751.1|BJ976751
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208391477|gb|DC937625.1|DC937625
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67696812|gb|BJ957045.1|BJ957045
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67717988|gb|BJ968247.1|BJ968247
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67716844|gb|BJ967103.1|BJ967103
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208380043|gb|DC914593.1|DC914593
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|37832212|gb|BJ590224.1|BJ590224
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67725048|gb|BJ975307.1|BJ975307
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208373996|gb|DC944729.1|DC944729
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208382921|gb|DC928346.1|DC928346
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208345094|gb|DC909456.1|DC909456
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162208343|gb|FC384655.1|FC384655
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|37826836|gb|BJ584848.1|BJ584848
EST:     GGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: GGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162266658|gb|FC442837.1|FC442837
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208355830|gb|DC930193.1|DC930193
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162217825|gb|FC393613.1|FC393613
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|100449524|gb|CJ973802.1|CJ973802
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGNTT-AGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|208365341|gb|DC950784.1|DC950784
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162215585|gb|FC391664.1|FC391664
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162245053|gb|FC422086.1|FC422086
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67725362|gb|BJ975621.1|BJ975621
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162239199|gb|FC416481.1|FC416481
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162275294|gb|FC451478.1|FC451478
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|67723671|gb|BJ973930.1|BJ973930
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGTAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
EST: gi|162275293|gb|FC451477.1|FC451477
EST:     TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAA                         GGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC
genomic: TCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 75

CAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTCAGGGCTCTATTGGATGTCGGCCTTGTGAGGACTACCACCGGAAACAGGGTTTTCGGAGCTCTGAAAgtaagtattc ... gcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCCGGCTACAGCAAGGAAGACAAGTCCTTGAATGCCGAGATTCACCGGAAGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgagtgacagccgagcttaaccctagacgtcacctatcatcctgcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCCGGCTACAGCAAGGAAGACAAGTCCTTGAATGCCGAGATTCACCGGAAGT
                gcttaac  putative branch site (score: 75)
                                      tcatcctgcttttcc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtattctggatgactctctacggaggttactgccactcctgtcattccgtttcactttcaccaatactagtaaggaaatagattccgagtgacagccgagcttaaccctagacgtcacctatcatcctgcttttccagGGTGCGTTGGATGGAGGTTTAGATGTTCCTCACAGCGAGAAGCGCTTCGCCGGCTACAGCAAGGAAGACAAGTCCTTGAATGCCGAGATTCACCGGAAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA