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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctctgtctttgtgaaatgacgtcttctttagcagcaatcgtggcacattgtgtggtgtgtaattcagctgtggatggactaaatgagatacttggcgtctgaagtgtattccgttgactctgtagGAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCGGCTAAAACTTCTGACAATGTGAACCAACTTTTCGAG

Basic information

species Physcomitrella patens
transcript PP1S38_328V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162267081|gb|FC443312.1|FC443312
EST:     TGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAG                         GAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCG
genomic: TGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAGgtaagttctc ... gactctgtagGAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCG
EST: gi|162276874|gb|FC452556.1|FC452556
EST:     TGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAG                         GAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCG
genomic: TGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAGgtaagttctc ... gactctgtagGAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCG
EST: gi|7648245|gb|AW739228.1|AW739228
EST:     TGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAG                         GAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCT
genomic: TGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAGgtaagttctc ... gactctgtagGAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCG
EST: gi|162152195|gb|FC328174.1|FC328174
EST:     TGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAG                         GAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCG
genomic: TGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAGgtaagttctc ... gactctgtagGAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatggactaaatgagatacttggcgtctgaagtgtattccgttgactctgtagGAAGCACAGACATATGCCGATAGTAATGGCATGTTCTACATCGAAACGTCGGCTAAAACTTCTGACAATGTGAACCAACTTTTCGAG
       actaaat  TA-rich tract