1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taatactggttgtgttttttttgacccctcttatatttatgtgtagaaacttatccaattgcacgtgtgacgtgccattgttgcgatcgtaactgcgcagGTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGTTTAACGTGCTCAGGCGATGGACGAGTAAGAAAAAGCAAACGCATAAGCT
species | Physcomitrella patens |
transcript | PP1S386_29V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ANGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATNNTTCAGCAG GTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGTEST: gi|162236076|gb|FC412235.1|FC412235
genomic: AAGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATGTTTCAGCAGgtaagtaatt ... aactgcgcagGTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGT
EST: AAGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATGTTTCAGCAG GTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGTEST: gi|37845705|gb|BJ603713.1|BJ603713
genomic: AAGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATGTTTCAGCAGgtaagtaatt ... aactgcgcagGTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGT
EST: CTAGGAATGTTTCAGCAG GTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGTEST: gi|162236075|gb|FC412234.1|FC412234
genomic: CTAGGAATGTTTCAGCAGgtaagtaatt ... aactgcgcagGTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGT
EST: AAGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATGTTTCAGCAG GTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGTEST: gi|162154384|gb|FC330191.1|FC330191
genomic: AAGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATGTTTCAGCAGgtaagtaatt ... aactgcgcagGTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGT
EST: AAGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATGTTTCAGCAG GTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGTEST: gi|67694308|gb|BJ954541.1|BJ954541
genomic: AAGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATGTTTCAGCAGgtaagtaatt ... aactgcgcagGTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGT
EST: AAGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATGTTTCAGCAG GTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGT
genomic: AAGGACAAGTGATGACTACCGCTCAAACTCCTCTAGGAATGTTTCAGCAGgtaagtaatt ... aactgcgcagGTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGT
gaaacttatccaattgcacgtgtgacgtgccattgttgcgatcgtaactgcgcagGTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGTTTAACGTGCTCAGGCGATGGACGAGTAAGAAAAAGCAAACGCATAAGCT
tcgtaac putative branch site (score: 14)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatactggttgtgttttttttgacccctcttatatttatgtgtagaaacttatccaattgcacgtgtgacgtgccattgttgcgatcgtaactgcgcagGTGACAACATGCCCAGCATGTAAGGGTTCCGGAGAGATTTCGACGCCATGTTTAACGTGCTCAGGCGATGGACGAGTAAGAAAAAGCAAACGCATAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA