1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgattcttaatttttttttctttttatgtattttaaaccccccgttcccgtatctaagagtgtccagatattttctctgatgaagttggtttctttcagctcgtaaattatctaactttggaaactttgttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCTATCACGTTTTTTGTAGAAGTAAAGCAGATCTTTGTACCATCAAATGGA
species | Physcomitrella patens |
transcript | PP1S37_83V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|15590622|gb|BI675238.1|BI675238
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGGTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGEST: gi|162153154|gb|FC329560.1|FC329560
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACG
EST: TTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTTTGCGACGTAGATTGGATCEST: gi|162196839|gb|FC373894.1|FC373894
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|162189058|gb|FC365176.1|FC365176
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|18337884|gb|BJ169908.1|BJ169908
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|162222108|gb|FC397336.1|FC397336
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|15261812|gb|BI437122.1|BI437122
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCTAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|208361844|gb|DC950116.1|DC950116
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|162208762|gb|FC384898.1|FC384898
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: TTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTTTGCGACGTAGATTGGATCEST: gi|162271019|gb|FC447424.1|FC447424
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: TTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTTTGCGACGTAGATTGGATCEST: gi|19785589|gb|BQ040342.1|BQ040342
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|37838754|gb|BJ596762.1|BJ596762
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|22132850|gb|BQ827398.1|BQ827398
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCEST: gi|162150420|gb|FC326692.1|FC326692
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
EST: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAG CTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
genomic: CTGCGTCAAGCAACTGAATATGATGCTCGCCGTTTGGGAACCATACCAAGgtgattctta ... gttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATC
agttggtttctttcagctcgtaaattatctaactttggaaactttgttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCTATCACGTTTTTTGTAGAAGTAAAGCAGATCTTTGTACCATCAAATGGA
atctaac putative branch site (score: 5)
ctttgttcct putative PPT
taaattatctaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattcttaatttttttttctttttatgtattttaaaccccccgttcccgtatctaagagtgtccagatattttctctgatgaagttggtttctttcagctcgtaaattatctaactttggaaactttgttcctgcagCTCTAAAGGAGTACTATCACGAGCTTGAGCTTCTGCGACGTAGATTGGATCTATCACGTTTTTTGTAGAAGTAAAGCAGATCTTTGTACCATCAAATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT