Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttactctttttatgtactctatcattggacactttagtcgttgttccttgtagaagtctgttttgtgattcttttgtctccgtgttttgcgtactcacgtgatcatattaatttgtcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCAACGCCTAAATGCCATTAATGCTGAGGGAGATGCGTAAACTAGATAGCAT

Basic information

species Physcomitrella patens
transcript PP1S371_31V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208382974|gb|DC927724.1|DC927724
EST:     GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         ATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
genomic: GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAAgtaagttact ... tcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
EST: gi|18334883|gb|BJ166900.1|BJ166900
EST:     GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         ATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
genomic: GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAAgtaagttact ... tcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
EST: gi|67692369|gb|BJ952602.1|BJ952602
EST:     GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         ATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
genomic: GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAAgtaagttact ... tcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
EST: gi|67700678|gb|BJ960911.1|BJ960911
EST:     GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         ATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
genomic: GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAAgtaagttact ... tcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
EST: gi|208373862|gb|DC956336.1|DC956336
EST:     GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         ATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
genomic: GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAAgtaagttact ... tcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
EST: gi|18338022|gb|BJ170046.1|BJ170046
EST:     GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         ATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
genomic: GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAAgtaagttact ... tcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
EST: gi|208360331|gb|DC949986.1|DC949986
EST:     GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         ATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
genomic: GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAAgtaagttact ... tcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
EST: gi|67696699|gb|BJ956932.1|BJ956932
EST:     GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         ATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
genomic: GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAAgtaagttact ... tcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
EST: gi|67691558|gb|BJ951791.1|BJ951791
EST:     GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         ATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA
genomic: GACCCTGACCAACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAAgtaagttact ... tcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgtctccgtgttttgcgtactcacgtgatcatattaatttgtcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCAACGCCTAAATGCCATTAATGCTGAGGGAGATGCGTAAACTAGATAGCAT
                                         tttgtctt  CT-rich tract
                             tgatcatattaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttactctttttatgtactctatcattggacactttagtcgttgttccttgtagaagtctgttttgtgattcttttgtctccgtgttttgcgtactcacgtgatcatattaatttgtcttgaacagATGGAAGATCCAGAAGTTGACATTTGAGGAGCGCCAGGCTGCTTTGGTTCAACGCCTAAATGCCATTAATGCTGAGGGAGATGCGTAAACTAGATAGCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG