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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcctaagttgtccacttagaatgtctgctttaaatggttctgtgtggtcatggtccgctggcccaggaggtcgatcactaagagtgtctgtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG

Basic information

species Physcomitrella patens
transcript PP1S367_8V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162208677|gb|FC385074.1|FC385074
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|37846861|gb|BJ604869.1|BJ604869
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|162224207|gb|FC399271.1|FC399271
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|208370718|gb|DC948255.1|DC948255
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|208360525|gb|DC950071.1|DC950071
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|162242295|gb|FC418872.1|FC418872
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|162242296|gb|FC418873.1|FC418873
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|162208676|gb|FC385073.1|FC385073
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|208353007|gb|DC926072.1|DC926072
EST:     ACACAGACAAAG-N                         GTGGCAAC-GGGCNATTTGCAAGCACTGGCATCGGTTCGTTGACCTATGNT
genomic: ACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|67726076|gb|BJ976335.1|BJ976335
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|208348734|gb|DC926409.1|DC926409
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|208357443|gb|DC953767.1|DC953767
EST:     TGGA-TTGCTNGCCGATAC-ACCCAGACAAAGTG                         G-GGCAAC-GGGCAA-TTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: TGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
EST: gi|37823603|gb|BJ581669.1|BJ581669
EST:     AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTG                         GTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT
genomic: AGCGGAAGTCGGGCATTGGATTTGCTGGCCGATACAACACAGACAAAGTGgtatggataa ... gtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtcatggtccgctggcccaggaggtcgatcactaagagtgtctgtttgtccagGTGGCAACGGGGCAATTTGCAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG
                                          tctgttt  CT-rich tract