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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagagcatctggactgagaattggatgagtttattaccgctacgtccatgcacaagtcaatttcacaccaagattaacgtctttctcccatatatgcagCTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCG

Basic information

species Physcomitrella patens
transcript PP1S360_49V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S360_49V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
gaagagcatctggactgagaattggatgagtttattaccgctacgtccatgcacaagtcaatttcacaccaag-attaacgtctttctcccatatatgcagCTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCG
   |      |    ||  || ||  |   |||||||    ||  | | |      |      |||    |   | |  | |   | |        | ||||||||   ||||||||| ||||||| ||   |||||| ||||||||||||||||||||||| ||| |
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG

upper sequence: PP1S360_49V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA07G01890.1 (Glycine max), 3'ss of exon 7
gaagagcatctggactgagaattggatgagtttattaccgctacgtccatgcacaagtcaatttcacaccaa--gattaacgtctttctcccatatatgcagCTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCG
        | ||   |     |    | | ||| |      ||  |    | |      || | | ||   |   | |  | |   | |        | ||||||||   ||||||||| ||||||| ||   |||||| ||||||||||||||||| ||||| ||| |
-------gtatgatttagttgtcaactaattttttatttattatattttcgtattttggaagtactcatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACGGGCTCGCATGTGGAATATGACCAAAGGCCAGATGTTTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatgcacaagtcaatttcacaccaagattaacgtctttctcccatatatgcagCTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCG
                           gattaac  putative branch site (score: 2)
                                 cgtctttctcccat  CT-rich tract
                         aagattaa  TA-rich tract