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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatggcaagttcgcgaattgtttaggaccaggaaatcaaagtggcgtctgacatggttacaactgtagtgattattgatgcatcttctttcgaattacagGTCGGTTCTGCTTCGATCGACGTTAGAAGGTGATAATCAACTGGATGGTTGGTTCACGTACATTGTTTTTTTCTTATTTGTGGGAACAGCCTCATTTTGG

Basic information

species Physcomitrella patens
transcript PP1S35_249V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159524|gb|FC336313.1|FC336313
EST:     GTTGTCTCGGGTGCTGTTGGTTCACACTCTGTTTTGTTTGCGAAGTCTCT                         GTCGGTTCTGCTTCGATCGACGTTAGAAGGTGATAATCAACTGGATGGTTG
genomic: GTTGTCTCGGGTGCTGTTGGTTCACACTCTGTTTTGTTTGCGAAGTCTCTgtaagtttgt ... cgaattacagGTCGGTTCTGCTTCGATCGACGTTAGAAGGTGATAATCAACTGGATGGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgacatggttacaactgtagtgattattgatgcatcttctttcgaattacagGTCGGTTCTGCTTCGATCGACGTTAGAAGGTGATAATCAACTGGATGGTTGGTTCACGTACATTGTTTTTTTCTTATTTGTGGGAACAGCCTCATTTTGG
                           tattgat  putative branch site (score: 3)
                                   catcttctttc  CT-rich tract
                         attattgat  TA-rich tract