1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtctttattcttcgaatgtggccctttctcagactattatagcactgttagttccattccacactgatggttcttagtatggtgcagttgcagttcagattaagcaggtcggcaattctcatctgatgagttgtgactctgtttgtgctgtgtaagATTCTCGGAGCCACAACCTCATTACTCAGCTTTCCGTGAATCCAGCTTCGGCTTTGGATTGTTGGACATCAAGAACCGCACAACTGCTACTTGGACATGG
species | Physcomitrella patens |
transcript | PP1S33_340V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTTACATTACAGTTGGTGATGGTGGCAATATTGAAGGCCTAGCTATAGG ATTCTCGGAGCCACAACCTCATTACTCAGCTTTCCGTGAATCCAGCTTCGGEST: gi|162177894|gb|FC355144.1|FC355144
genomic: ACTTACATTACAGTTGGTGATGGTGGCAATATTGAAGGCCTAGCTATAGGgtgagtcttt ... gctgtgtaagATTCTCGGAGCCACAACCTCATTACTCAGCTTTCCGTGAATCCAGCTTCGG
EST: ACTTACATTACAGTTGGTGATGGTGGCAATATTGAAGGCCTAGCTATAGG ATTCTCGGAGCCACAACCTCATTACTCAGCTTTCCGTGAATCCAGCTTCGGEST: gi|162185744|gb|FC362092.1|FC362092
genomic: ACTTACATTACAGTTGGTGATGGTGGCAATATTGAAGGCCTAGCTATAGGgtgagtcttt ... gctgtgtaagATTCTCGGAGCCACAACCTCATTACTCAGCTTTCCGTGAATCCAGCTTCGG
EST: ACTTACATTACAGTTGGTGATGGTGGCAATATTGAAGGCCTAGCTATAGG ATTCTCGGAGCCACAACCTCATTACTCAGCTTTCCGTGAATCCAGCTTCGG
genomic: ACTTACATTACAGTTGGTGATGGTGGCAATATTGAAGGCCTAGCTATAGGgtgagtcttt ... gctgtgtaagATTCTCGGAGCCACAACCTCATTACTCAGCTTTCCGTGAATCCAGCTTCGG
aagcaggtcggcaattctcatctgatgagttgtgactctgtttgtgctgtgtaagATTCTCGGAGCCACAACCTCATTACTCAGCTTTCCGTGAATCCAGCTTCGGCTTTGGATTGTTGGACATCAAGAACCGCACAACTGCTACTTGGACATGG
atctgat putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctttattcttcgaatgtggccctttctcagactattatagcactgttagttccattccacactgatggttcttagtatggtgcagttgcagttcagattaagcaggtcggcaattctcatctgatgagttgtgactctgtttgtgctgtgtaagATTCTCGGAGCCACAACCTCATTACTCAGCTTTCCGTGAATCCAGCTTCGGCTTTGGATTGTTGGACATCAAGAACCGCACAACTGCTACTTGGACATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC