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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagtataattgtcaggaaccacggagacttcatttgggtgtattacgaacagcagacagacattgcaaatactaatatttgatcttgtgacacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGATCAGGTTCACATGGTTCTCGAAGCATCTTTTTTGCATGATCGTTTTTCG

Basic information

species Physcomitrella patens
transcript PP1S33_245V6.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162253722|gb|FC429836.1|FC429836
EST:     CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAA                         GTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
genomic: CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAAgtgcgttgct ... cacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
EST: gi|162236809|gb|FC413488.1|FC413488
EST:     CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAA                         GTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
genomic: CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAAgtgcgttgct ... cacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
EST: gi|22491870|gb|BU051793.1|BU051793
EST:     CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAA                         GTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
genomic: CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAAgtgcgttgct ... cacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
EST: gi|208396907|gb|DC920447.1|DC920447
EST:     CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAA                         GTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
genomic: CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAAgtgcgttgct ... cacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
EST: gi|208381571|gb|DC923157.1|DC923157
EST:     CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAA                         GTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
genomic: CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAAgtgcgttgct ... cacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
EST: gi|208346127|gb|DC917080.1|DC917080
EST:     CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAA                         GTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
genomic: CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAAgtgcgttgct ... cacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
EST: gi|162220029|gb|FC395375.1|FC395375
EST:     CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAA                         GTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
genomic: CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAAgtgcgttgct ... cacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
EST: gi|208382981|gb|DC927731.1|DC927731
EST:     CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAA                         -TTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA
genomic: CCAGTGACCCAAAGGTTTCTGAATGGCTAATCGAGAAATACGGTTCCAAAgtgcgttgct ... cacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaacagcagacagacattgcaaatactaatatttgatcttgtgacacctcgcagGTTAACTTGTATGTGGATCACTCACATGTAGGGCAGTTGGAACGCTTACGATCAGGTTCACATGGTTCTCGAAGCATCTTTTTTGCATGATCGTTTTTCG
                     aaatactaatatttga  TA-rich tract