1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtagtagcagttgcttattctggtggattcaagagctcaaattttacattatcctgctgcattggacttacttctgcatgcctcaccttgatatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAAGAAGGGATATCGGCAACATCACACTCTTCGCCGACGCACAAG
species | Physcomitrella patens |
transcript | PP1S332_23V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAG GGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAEST: gi|162214828|gb|FC390963.1|FC390963
genomic: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAGgtagtctgct ... atatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTA
EST: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAG GGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAEST: gi|162258040|gb|FC434134.1|FC434134
genomic: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAGgtagtctgct ... atatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTA
EST: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAG GGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAEST: gi|162219571|gb|FC395567.1|FC395567
genomic: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAGgtagtctgct ... atatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTA
EST: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAG GGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAEST: gi|162214827|gb|FC390962.1|FC390962
genomic: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAGgtagtctgct ... atatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTA
EST: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAG GGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAEST: gi|37853342|gb|BJ611350.1|BJ611350
genomic: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAGgtagtctgct ... atatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTA
EST: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAG GGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAEST: gi|18339971|gb|BJ171999.1|BJ171999
genomic: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAGgtagtctgct ... atatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTA
EST: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAG GGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAEST: gi|208381568|gb|DC923154.1|DC923154
genomic: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAGgtagtctgct ... atatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTA
EST: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAG GGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTA
genomic: ACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAGgtagtctgct ... atatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTA
acattatcctgctgcattggacttacttctgcatgcctcaccttgatatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAAGAAGGGATATCGGCAACATCACACTCTTCGCCGACGCACAAG
ttgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtagcagttgcttattctggtggattcaagagctcaaattttacattatcctgctgcattggacttacttctgcatgcctcaccttgatatttgcagGGGCAAGGCTTAGGTAAGGCTTTAGTGGAGCAGATGATCCGGGCTTTGTTAAGAAGGGATATCGGCAACATCACACTCTTCGCCGACGCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgca