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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaggtatccatgtatggaaggaagaaatcctagtatgtagctcttatctgtatcatatgtttgatattcctgtaactcctctattttgtaaactagcagGAGGGGATGAAGAGTGGGCGAGTAACAGAGGCCTAATGTTGGTGACGCGAGATGCCAGTAATGTTAGCAGCGGAACCCCTGGCATACATATACGGGGAAG

Basic information

species Physcomitrella patens
transcript PP1S31_309V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162154852|gb|FC331894.1|FC331894
EST:     ACGAGATGTTCCCCCAAACGAATCGTTTACAAGCACCAATTTAGACGAAG                         GAGGGGATGAAGAGTGGGCGAGTAACAGAGGCCTAATGTTGGTGACGCGAG
genomic: ACGAGATGTTCCCCCAAACGAATCGTTTACAAGCACCAATTTAGACGAAGgtactcaatt ... aaactagcagGAGGGGATGAAGAGTGGGCGAGTAACAGAGGCCTAATGTTGGTGACGCGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctgtatcatatgtttgatattcctgtaactcctctattttgtaaactagcagGAGGGGATGAAGAGTGGGCGAGTAACAGAGGCCTAATGTTGGTGACGCGAGATGCCAGTAATGTTAGCAGCGGAACCCCTGGCATACATATACGGGGAAG
                         ctgtaac  putative branch site (score: 3)
          atatgtttgatatt  TA-rich tract