1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggtacatggatgattaattacttaccggtaatgctggtctcgatgagtttaaagtaaagaatgtctcatccttagacaaagatttgtttgattactgcagATGGAGATACCCAACTGCCAACGACTTCGGTTCAGAAATCATTCCTGCTTCAGCTAAGGAGTTCAATGTTCAG
species | Physcomitrella patens |
transcript | PP1S2_204V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTATGGGTATTTATGTATTCAAGAAGGACGTCCTTATGAAGCTTCTAAG ATGGAGATACCCAACTGCCAACGACTTCGGTTCAGAAATCATTCCTGCTTCEST: gi|162185891|gb|FC360991.1|FC360991
genomic: TCTATGGGTATTTATGTATTCAAGAAGGACGTCCTTATGAAGCTTCTAAGgtaagcacca ... attactgcagATGGAGATACCCAACTGCCAACGACTTCGGTTCAGAAATCATTCCTGCTTC
EST: TCTATGGGTATTTATGTATTCAAGAAGGACGTCCTTATGAAGCTTCTAAG ATGGAGATACCCAACTGCCAACG
genomic: TCTATGGGTATTTATGTATTCAAGAAGGACGTCCTTATGAAGCTTCTAAGgtaagcacca ... attactgcagATGGAGATACCCAACTGCCAACG
agtttaaagtaaagaatgtctcatccttagacaaagatttgtttgattactgcagATGGAGATACCCAACTGCCAACGACTTCGGTTCAGAAATCATTCCTGCTTCAGCTAAGGAGTTCAATGTTCAG
gtttgat putative branch site (score: 1)
aaagtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtacatggatgattaattacttaccggtaatgctggtctcgatgagtttaaagtaaagaatgtctcatccttagacaaagatttgtttgattactgcagATGGAGATACCCAACTGCCAACGACTTCGGTTCAGAAATCATTCCTGCTTCAGCTAAGGAGTTCAATGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG