1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagttttttggttcctagccctcgtcacttaacaacttaagcgaaataacaattttccacatgtttatattactgcgcctagttcgtcgtcccctgtcctcacctgcgaagcacagtttttcccttgaaatgctttgtttaggttatcatgtagtaacaagcgtggttttcaattttttccagATTAGGTGATAAAGTGAAGCTTAATTGGAAGCTTACCACCATTAAGAAGACCGATGCTGGCTACGCCTTGACATACGAGACACCTGAAGGAACAAAGACC
species | Physcomitrella patens |
transcript | PP1S28_304V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTTCCTTTAAAAAGGGGTTGATTACTCTTCCAAATGCAATCGCTGCACA ATTAGGTGATAAAGTGAAGCTTAATTGGAAGCTTACCACCATTAAGAAGACEST: gi|162231097|gb|FC406208.1|FC406208
genomic: GGTTCCTTTAAAAAGGGGTTGATTACTCTTCCAAATGCAATCGCTGCACAgtaagttttt ... ttttttccagATTAGGTGATAAAGTGAAGCTTAATTGGAAGCTTACCACCATTAAGAAGAC
EST: GGTTCCTTTAAAAAGGGGTTGATTACTCTTCCAAATGCAATCGCTGCACA ATTAGGTGATAAAGTGAAGCTTAATTGGAAGCTTACCACCATTAAGAAGACEST: gi|162155602|gb|FC331540.1|FC331540
genomic: GGTTCCTTTAAAAAGGGGTTGATTACTCTTCCAAATGCAATCGCTGCACAgtaagttttt ... ttttttccagATTAGGTGATAAAGTGAAGCTTAATTGGAAGCTTACCACCATTAAGAAGAC
EST: GGTTCCTTTAAAAAGGGGTTGATTACTCTTCCAAATGCAATCGCTGCACA ATTAGGTGATAAAGTGAAGCTTAATTGGAAGCTTACCACCATTA
genomic: GGTTCCTTTAAAAAGGGGTTGATTACTCTTCCAAATGCAATCGCTGCACAgtaagttttt ... ttttttccagATTAGGTGATAAAGTGAAGCTTAATTGGAAGCTTACCACCATTA
aatgctttgtttaggttatcatgtagtaacaagcgtggttttcaattttttccagATTAGGTGATAAAGTGAAGCTTAATTGGAAGCTTACCACCATTAAGAAGACCGATGCTGGCTACGCCTTGACATACGAGACACCTGAAGGAACAAAGACC
tagtaac putative branch site (score: 7)
ttttcaattttttcc putative PPT
ttttcaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttttggttcctagccctcgtcacttaacaacttaagcgaaataacaattttccacatgtttatattactgcgcctagttcgtcgtcccctgtcctcacctgcgaagcacagtttttcccttgaaatgctttgtttaggttatcatgtagtaacaagcgtggttttcaattttttccagATTAGGTGATAAAGTGAAGCTTAATTGGAAGCTTACCACCATTAAGAAGACCGATGCTGGCTACGCCTTGACATACGAGACACCTGAAGGAACAAAGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA