1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggcaggtagaaaattatcttggccaagttgaagcctgtggatgcacatattcttgttaccattatcttgtttcacttcaatagtgggttgtttcttttagAGCTTGTGAAGCCCTGAAGAATTGTCTCCCTGAGCTGCTTCAAAACGGTACCTTCAACAACTGCCTACGG
species | Physcomitrella patens |
transcript | PP1S276_27V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCCTCAAACATATCATTCGATGCTATCTTCGACTTTCTGATAATCTGAG AGCTTGTGAAGCCCTGAAGAATTGTCTCCCTGAGCTGCTTCAAAACGGTACEST: gi|208372489|gb|DC948729.1|DC948729
genomic: CTCCTCAAACATATCATTCGATGCTATCTTCGACTTTCTGATAATCTGAGgtgggtactt ... tttcttttagAGCTTGTGAAGCCCTGAAGAATTGTCTCCCTGAGCTGCTTCAAAACGGTAC
EST: CTCCTCAAACATATCATTCGATGCTATCTTCGACTTTCTGATAATCTGAG AGCTTGTGAAGCCCTGAAGAATTGTCTCCCTGAGCTGCTTCAAAACGGTACEST: gi|162181709|gb|FC358739.1|FC358739
genomic: CTCCTCAAACATATCATTCGATGCTATCTTCGACTTTCTGATAATCTGAGgtgggtactt ... tttcttttagAGCTTGTGAAGCCCTGAAGAATTGTCTCCCTGAGCTGCTTCAAAACGGTAC
EST: CTCCTCAAACATATCATTCGATGCTATCTTCGACTTTCTGATAATCTGAG AGCTTGTGAAGCCCTGAAGAATTGTCTCCCTGAGCTGCTTCAAAACGGTAC
genomic: CTCCTCAAACATATCATTCGATGCTATCTTCGACTTTCTGATAATCTGAGgtgggtactt ... tttcttttagAGCTTGTGAAGCCCTGAAGAATTGTCTCCCTGAGCTGCTTCAAAACGGTAC
catattcttgttaccattatcttgtttcacttcaatagtgggttgtttcttttagAGCTTGTGAAGCCCTGAAGAATTGTCTCCCTGAGCTGCTTCAAAACGGTACCTTCAACAACTGCCTACGG
ttgtttctttt CT-rich tract
tttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcaggtagaaaattatcttggccaagttgaagcctgtggatgcacatattcttgttaccattatcttgtttcacttcaatagtgggttgtttcttttagAGCTTGTGAAGCCCTGAAGAATTGTCTCCCTGAGCTGCTTCAAAACGGTACCTTCAACAACTGCCTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - atgcaca