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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacctgaatctccttattcgattttattcgctgtatttattatttatttatttatttattgaatgcagcatcaacagttagataatttgacctttaggtgtaacattaaccaactgtgcagacttggctggtattcagtgtccgcgaactcgagcctttaacatctgaaacttatgaatgcagAGCTGTTTCAGCGGTTGTTCCGGCAAGATCTTCTTGTTGCCAGCTTGTTTCGGAATTTCTTGCTGGCTGAACGTATTATGAGGTCTGCTAACTGCTGTCC

Basic information

species Physcomitrella patens
transcript PP1S26_271V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S26_271V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 7
gtaagtaacctgaatctccttattcgattttattcgctgtatttattatttatttatttatttattgaatgcagcatcaacagt-tagataatttgacctttaggtgtaacattaaccaactgtgcagacttggctggtattcagtgtccgcgaactcgagcctttaacatctgaaacttatgaatgcagAGCTGTTTCAGCGGTTGTTCCGGCAAGATCTTCTTGTTGCCAGCTTGTTTCGGAATTTCTTGCTGGCTGAACGTATTATGAGGTCTGCTAACTGCTGTCC
                                                                     |   || ||  |  | || |   ||||    | | |   |||   |   || | | || | |        | | | |||| ||  | |   |  ||||  ||   |   | |    |||||| ||||| ||  || | ||| ||||||||||||||||||| ||| | ||||| || |||||||| |||||  | || ||| | || || || || | |||
--------------------------------------------------------------------gtatggcgtctgcgatgtatactttttggggatcaagaa-aactagagaaaattattcaaattcaa-----aataaatgtcagcttattttggg-tttatgatacaagtttcactg-tgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtattcagtgtccgcgaactcgagcctttaacatctgaaacttatgaatgcagAGCTGTTTCAGCGGTTGTTCCGGCAAGATCTTCTTGTTGCCAGCTTGTTTCGGAATTTCTTGCTGGCTGAACGTATTATGAGGTCTGCTAACTGCTGTCC
                           ctttaac  putative branch site (score: 3)
                            tttaacat  TA-rich tract