1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgttttctttcttcgcaattagttctggctttgcttcttgttgttgttgttttgctattgctgctgtcttctttttctttgtttcttttaggtgtcctgcatatttttagttaaggattgatggccgtgatatgcactattgatcatgcagATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTAAAGGCATTCGACTCTCCTTGTAGATGAAGATTAGGGAGTAACCCAGAAA
species | Physcomitrella patens |
transcript | PP1S25_89V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAG ATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTAEST: gi|162273472|gb|FC449617.1|FC449617
genomic: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAGgtttgttttc ... gatcatgcagATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTA
EST: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAG ATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTAEST: gi|208354191|gb|DC957411.1|DC957411
genomic: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAGgtttgttttc ... gatcatgcagATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTA
EST: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAG ATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTAEST: gi|162273471|gb|FC449616.1|FC449616
genomic: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAGgtttgttttc ... gatcatgcagATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTA
EST: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAG ATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTAEST: gi|37828975|gb|BJ586987.1|BJ586987
genomic: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAGgtttgttttc ... gatcatgcagATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTA
EST: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAG ATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTAEST: gi|208387454|gb|DC949239.1|DC949239
genomic: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAGgtttgttttc ... gatcatgcagATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTA
EST: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAG ATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTA
genomic: AACATTATTAGTATTACAGGCTTCTGTTTCTGCATCTTTGAAATGACAAGgtttgttttc ... gatcatgcagATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTA
ctgcatatttttagttaaggattgatggccgtgatatgcactattgatcatgcagATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTAAAGGCATTCGACTCTCCTTGTAGATGAAGATTAGGGAGTAACCCAGAAA
tattgat putative branch site (score: 13)
tatttttagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttttctttcttcgcaattagttctggctttgcttcttgttgttgttgttttgctattgctgctgtcttctttttctttgtttcttttaggtgtcctgcatatttttagttaaggattgatggccgtgatatgcactattgatcatgcagATGCAGCAACTGATGATGGGAGCTCCTGGGTGAAAGTTGTAAATCTGTGTAAAGGCATTCGACTCTCCTTGTAGATGAAGATTAGGGAGTAACCCAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA