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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccagtcatagggtcttatacttagatgtcgaggttagaatgaggtgacatgatcatacattgagtttttccgctgatgtgcgaggtctctgtggttgcagCTTTCCAAGGGATTCGATTCTAAGTTAGGGGGATTCGGAGGAGCTCCAAAATTTCCTCGGCCCGTAGAGGTAGCTCTCATGATGAGGAACTACAAGCGTT

Basic information

species Physcomitrella patens
transcript PP1S25_348V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162188159|gb|FC363925.1|FC363925
EST:     TCACAGAGAGCAGTGTCCCTGCTCAAGCTGTTACGCTTTGTGCTAATCAG                         CTTTCCAAGGGATTCGATTCTAAGTTAGGGGGATTCGGAGGAGCTCCAAAA
genomic: TCACAGAGAGCAGTGTCCCTGCTCAAGCTGTTACGCTTTGTGCTAATCAGgtccttgatt ... gtggttgcagCTTTCCAAGGGATTCGATTCTAAGTTAGGGGGATTCGGAGGAGCTCCAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatgatcatacattgagtttttccgctgatgtgcgaggtctctgtggttgcagCTTTCCAAGGGATTCGATTCTAAGTTAGGGGGATTCGGAGGAGCTCCAAAATTTCCTCGGCCCGTAGAGGTAGCTCTCATGATGAGGAACTACAAGCGTT
                         cgctgat  putative branch site (score: 4)
                                        tctctgt  putative PPT
         atacatt  TA-rich tract