1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...acatgtgatgatatgcatcagcggaggggtttttcttggtataatttgccttgaagaaggtaatggagccattgatcgagcgcttggttactgtgcatagGTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAGTTTCTGACCTTAAAAAGGATCGGTGGATTACGGATATCAAGTACGCCGA
species | Physcomitrella patens |
transcript | PP1S25_21V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTAGATGACATCTATGCAAATTTTCTGGAAGAAGTGTCACGTGCTAAAG GTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAGEST: gi|162151650|gb|FC327779.1|FC327779
genomic: TCTAGATGACATCTATGCAAATTTTCTGGAAGAAGTGTCACGTGCTAAAGgtgcggatct ... ctgtgcatagGTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAG
EST: TCTAGATGACATCTATGCAAATTTTCTGGAAGAAGTGTCACGTGCTAAAG GTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAGEST: gi|162168391|gb|FC344705.1|FC344705
genomic: TCTAGATGACATCTATGCAAATTTTCTGGAAGAAGTGTCACGTGCTAAAGgtgcggatct ... ctgtgcatagGTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAG
EST: TCTAGATGACATCTATGCAAATTTTCTGGAAGAAGTGTCACGTGCTAAAG GTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAGEST: gi|162158571|gb|FC334574.1|FC334574
genomic: TCTAGATGACATCTATGCAAATTTTCTGGAAGAAGTGTCACGTGCTAAAGgtgcggatct ... ctgtgcatagGTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAG
EST: TCTAGATGACATCTATGCAAATTTTCTGGAAGAAGTGTCACGTGCTAAAG GTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAG
genomic: TCTAGATGACATCTATGCAAATTTTCTGGAAGAAGTGTCACGTGCTAAAGgtgcggatct ... ctgtgcatagGTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAG
ttgccttgaagaaggtaatggagccattgatcgagcgcttggttactgtgcatagGTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAGTTTCTGACCTTAAAAAGGATCGGTGGATTACGGATATCAAGTACGCCGA
cattgat putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgtgatgatatgcatcagcggaggggtttttcttggtataatttgccttgaagaaggtaatggagccattgatcgagcgcttggttactgtgcatagGTAAAACTAAGGAAGAAGTTGAGGCTTTATTTGAATCTGGTATATACAAAGTTTCTGACCTTAAAAAGGATCGGTGGATTACGGATATCAAGTACGCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA