1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcgtcagctgctaagtttttattttcatctttagaaaggtaatttatttatcttttaattttgagtttacgttcttagattgactacgtacgtgaacagGCTGATCATTTGCGACAACAGACGTTACAACAAATGCACCGGGTATTAACCATTCGCCAAGTAGCCCGAGGACTTCTTGCGATGGGTGATTACTTTGCTC
species | Physcomitrella patens |
transcript | PP1S258_7V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGTGGCCATGGGACAACTTGGGAACCTCGAAGGTTTCGTGCGTCAG GCTGATCATTTGCGACAACAGACGTTACAACAAATGCACCGGGTATTAACCEST: gi|162171187|gb|FC346358.1|FC346358
genomic: TGGCTGTGGCCATGGGACAACTTGGGAACCTCGAAGGTTTCGTGCGTCAGgtacgtactt ... acgtgaacagGCTGATCATTTGCGACAACAGACGTTACAACAAATGCACCGGGTATTAACC
EST: TGGCTGTGGCCATGGGACAACTTGGGAACCTCGAAGGTTTCGTGCGTCAG GCTGATCATTTGCGACAACAGACGTTACAACAAATGCACCGGGTATTAACCEST: gi|37821321|gb|BJ579387.1|BJ579387
genomic: TGGCTGTGGCCATGGGACAACTTGGGAACCTCGAAGGTTTCGTGCGTCAGgtacgtactt ... acgtgaacagGCTGATCATTTGCGACAACAGACGTTACAACAAATGCACCGGGTATTAACC
EST: CATGGGACAACTTGGGAACCTCGAAGGTTTTCGTGCGTCAG GCTGATCATTTGCGACAACAGACGTTACAACAAATGCACCGGGTATTAACC
genomic: CATGGGACAACTTGGGAACCTCGAAGG-TTTCGTGCGTCAGgtacgtactt ... acgtgaacagGCTGATCATTTGCGACAACAGACGTTACAACAAATGCACCGGGTATTAACC
tatttatcttttaattttgagtttacgttcttagattgactacgtacgtgaacagGCTGATCATTTGCGACAACAGACGTTACAACAAATGCACCGGGTATTAACCATTCGCCAAGTAGCCCGAGGACTTCTTGCGATGGGTGATTACTTTGCTC
gattgac putative branch site (score: 3)
ttttaattttgagttt TA-rich tract