1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttggcttcggttcttgctgcatgggcttttgtcaatctgatggtcaggccacggattatgcgggtttggagtccccttgtttgcatggtctttgcggtgtctgaaattggaagttgtatgagttgtttgacgtttgcagtggtcaatttgattgacaagtggtgaatgttacagGCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGAAGGATGGTTTGCAGCCGACGCAGACAACATCTCCGTTCAAAGTTGGGAC
species | Physcomitrella patens |
transcript | PP1S24_237V6.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAGATCTGAG GCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGAEST: gi|162184634|gb|FC360832.1|FC360832
genomic: CCAGATCTGAGgttggcttcg ... aatgttacagGCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGA
EST: TCAGTAATGAAGGCGTTTACACTAGTCTTGGAGAAACGGCCAGATCTGAG GCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGAEST: gi|162175629|gb|FC351827.1|FC351827
genomic: TCAGTAATGAAGGCGTTTACACTAGTCTTGGAGAAACGGCCAGATCTGAGgttggcttcg ... aatgttacagGCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGA
EST: TCAGTAATGAAGGCGTTTACACTAGTCTTGGAGAAACGGCCAGATCTGAG GCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGAEST: gi|162243386|gb|FC417087.1|FC417087
genomic: TCAGTAATGAAGGCGTTTACACTAGTCTTGGAGAAACGGCCAGATCTGAGgttggcttcg ... aatgttacagGCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGA
EST: TCAGTAATGAAGGCGTTTACACTAGTCTTGGAGAAACGGCCAGATCTGAG GCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGA
genomic: TCAGTAATGAAGGCGTTTACACTAGTCTTGGAGAAACGGCCAGATCTGAGgttggcttcg ... aatgttacagGCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGA
gagttgtttgacgtttgcagtggtcaatttgattgacaagtggtgaatgttacagGCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGAAGGATGGTTTGCAGCCGACGCAGACAACATCTCCGTTCAAAGTTGGGAC
gattgac putative branch site (score: 3)
aatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggcttcggttcttgctgcatgggcttttgtcaatctgatggtcaggccacggattatgcgggtttggagtccccttgtttgcatggtctttgcggtgtctgaaattggaagttgtatgagttgtttgacgtttgcagtggtcaatttgattgacaagtggtgaatgttacagGCAAGAGGGGATGGCATTCAAAGTTCTGCAGTGGTATTTGTGTCGCATGGAAGGATGGTTTGCAGCCGACGCAGACAACATCTCCGTTCAAAGTTGGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG