1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatggccgcttaggctccacattcagcttataattacgtggaaacttacagcatttcctacgctttataatttgttaataacaatgaaatctattgaattcggaagcttacttccgcatgtatctttcttcttctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTG
species | Physcomitrella patens |
transcript | PP1S246_34V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAG GTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAEST: gi|208373112|gb|DC948877.1|DC948877
genomic: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAGgtatggccgc ... tctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACA
EST: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAG GTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAEST: gi|37825639|gb|BJ583705.1|BJ583705
genomic: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAGgtatggccgc ... tctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACA
EST: TNGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAG GTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAEST: gi|37844368|gb|BJ602376.1|BJ602376
genomic: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAGgtatggccgc ... tctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACA
EST: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAG GTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAEST: gi|162267515|gb|FC444266.1|FC444266
genomic: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAGgtatggccgc ... tctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACA
EST: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAG GTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAEST: gi|208382418|gb|DC927952.1|DC927952
genomic: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAGgtatggccgc ... tctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACA
EST: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAG GTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAEST: gi|208396134|gb|DC924600.1|DC924600
genomic: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAGgtatggccgc ... tctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACA
EST: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAG GTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACA
genomic: TTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTAAGgtatggccgc ... tctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACA
aatctattgaattcggaagcttacttccgcatgtatctttcttcttctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTG
agcttac putative branch site (score: 3)
cttccgcatgtatctt CT-rich tract
attgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggccgcttaggctccacattcagcttataattacgtggaaacttacagcatttcctacgctttataatttgttaataacaatgaaatctattgaattcggaagcttacttccgcatgtatctttcttcttctcttgtagGTAAGGGATGAGATTTACGAGGCCTTCGAGAATATTTATCCTGTGTTGACAGAGTTTAGGAAGATCCAGCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA